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(-) Description

Title :  CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE IN COMPLEX WITH 2-(5-METHOXY-2-(4-METHOXYPHENYLSULFONYLCARBAMOYL)-1H-INDOL-1-YL)ACETIC ACID
 
Authors :  H. L. Silvestre, T. L. Blundell
Date :  22 Sep 13  (Deposition) - 27 Aug 14  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Alpha Beta 3-Layer(Aba) Sandwich Rossmann Fold, Pantoate-Ligase, Atp Binding, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Hung, H. L. Silvestre, S. Wen, G. P. George, J. Boland, T. L. Blundell, A. Ciulli, C. Abell
Optimization Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase Based On Group Efficiency Analysis.
Chemmedchem V. 11 38 2016
PubMed-ID: 26486566  |  Reference-DOI: 10.1002/CMDC.201500414

(-) Compounds

Molecule 1 - PANTOTHENATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.2.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B
    Expression System Strain: ROSETTA 2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MT3707, MTCY07H7B.20, PANC, RV3602C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
12DQ3Ligand/Ion(5-METHOXY-2-{[(4-METHOXYPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO3Ligand/Ion1,2-ETHANEDIOL
3EOH5Ligand/IonETHANOL
Biological Unit 1 (3, 11)
No.NameCountTypeFull Name
12DQ3Ligand/Ion(5-METHOXY-2-{[(4-METHOXYPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO3Ligand/Ion1,2-ETHANEDIOL
3EOH5Ligand/IonETHANOL
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
12DQ1Ligand/Ion(5-METHOXY-2-{[(4-METHOXYPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
3EOH4Ligand/IonETHANOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:115 , THR A:117 , GLN B:119 , PRO B:120 , 2DQ B:403BINDING SITE FOR RESIDUE EOH A 401
02AC2SOFTWARETHR A:218 , HIS B:222 , THR B:225BINDING SITE FOR RESIDUE EOH A 403
03AC3SOFTWAREASN A:176BINDING SITE FOR RESIDUE EOH A 404
04AC4SOFTWAREPRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , TYR A:82 , VAL A:139 , VAL A:143 , PHE A:157 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , HOH A:647BINDING SITE FOR RESIDUE 2DQ A 405
05AC5SOFTWAREMET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , HOH A:639 , ASP B:174BINDING SITE FOR RESIDUE EDO A 406
06AC6SOFTWAREMET B:40 , PHE B:67 , ASN B:69 , 2DQ B:402 , HOH B:525BINDING SITE FOR RESIDUE EDO B 401
07AC7SOFTWAREPRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , LEU B:50 , VAL B:139 , VAL B:143 , PHE B:157 , GLN B:164 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , EDO B:401BINDING SITE FOR RESIDUE 2DQ B 402
08AC8SOFTWAREMET A:71 , LEU A:114 , PRO A:133 , THR A:134 , ALA A:137 , EOH A:401 , ILE B:3 , PHE B:6 , PRO B:8 , LEU B:27 , THR B:30 , ARG B:32 , GLN B:119BINDING SITE FOR RESIDUE 2DQ B 403
09AC9SOFTWAREASP A:174 , MET B:109 , TYR B:110 , GLY B:113 , LEU B:114 , ARG B:115 , THR B:116 , LYS B:145 , HOH B:524BINDING SITE FOR RESIDUE EDO B 404
10BC1SOFTWAREGLY B:244 , ARG B:273 , GLY B:275BINDING SITE FOR RESIDUE EOH B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MUI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MUI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MUI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MUI)

(-) Exons   (0, 0)

(no "Exon" information available for 4MUI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee..hhhhh......hhhhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeee...........eeeeeeeeee..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mui A   3 IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGTF 290
                                    12        22        32        42        52        62        72||      87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287   
                                                                                                 73|                                                                                                                                                                                                                   
                                                                                                  79                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mui B   2 AIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIG 288
                                    11        21        31        41        51        61        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286  
                                                                                               70|                                                                                                                                                                                                          
                                                                                                86
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MUI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MUI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MUI)

(-) Gene Ontology  (13, 20)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PANC_MYCTO | P9WIL4: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4mug 4muh 4muj 4muk 4mul 4mun
        PANC_MYCTU | P9WIL5: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4mug 4muh 4muj 4muk 4mul 4mun

(-) Related Entries Specified in the PDB File

4mq6 4mue 4muf 4mug 4muh