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(-) Description

Title :  CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE IN COMPLEX WITH 2-(2-(5-ACETAMIDO-1,3,4-THIADIAZOL-2-YLSULFONYLCARBAMOYL)-5-METHOXY-1H-INDOL-1-YL)ACETIC ACID
 
Authors :  H. L. Silvestre, T. L. Blundell
Date :  21 Sep 13  (Deposition) - 27 Aug 14  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Alpha Beta 3-Layer(Aba) Sandwich Rossmann Fold, Pantoate-Ligase, Atp Binding, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Hung, H. L. Silvestre, S. Wen, G. P. George, J. Boland, T. L. Blundell, A. Ciulli, C. Abell
Optimization Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase Based On Group Efficiency Analysis.
Chemmedchem V. 11 38 2016
PubMed-ID: 26486566  |  Reference-DOI: 10.1002/CMDC.201500414

(-) Compounds

Molecule 1 - PANTOTHENATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.2.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B
    Expression System Strain: ROSETTA2
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: MT3707, MTCY07H7B.20, PANC, RV3602C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
12DN3Ligand/Ion[2-({[5-(ACETYLAMINO)-1,3,4-THIADIAZOL-2-YL]SULFONYL}CARBAMOYL)-5-METHOXY-1H-INDOL-1-YL]ACETICACID
2EDO8Ligand/Ion1,2-ETHANEDIOL
3EOH4Ligand/IonETHANOL
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
12DN3Ligand/Ion[2-({[5-(ACETYLAMINO)-1,3,4-THIADIAZOL-2-YL]SULFONYL}CARBAMOYL)-5-METHOXY-1H-INDOL-1-YL]ACETICACID
2EDO8Ligand/Ion1,2-ETHANEDIOL
3EOH4Ligand/IonETHANOL
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
12DN1Ligand/Ion[2-({[5-(ACETYLAMINO)-1,3,4-THIADIAZOL-2-YL]SULFONYL}CARBAMOYL)-5-METHOXY-1H-INDOL-1-YL]ACETICACID
2EDO4Ligand/Ion1,2-ETHANEDIOL
3EOH3Ligand/IonETHANOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:115 , THR A:117 , HOH A:602 , GLN B:119 , PRO B:120BINDING SITE FOR RESIDUE EOH A 401
02AC2SOFTWARETHR A:218 , HIS B:222 , THR B:225BINDING SITE FOR RESIDUE EOH A 402
03AC3SOFTWAREPRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LYS A:160 , GLN A:164 , PRO A:185 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , EDO A:405 , HOH A:515 , HOH A:679 , HOH A:684 , HOH A:693BINDING SITE FOR RESIDUE 2DN A 403
04AC4SOFTWAREMET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREGLN A:72 , VAL A:142 , 2DN A:403 , HOH A:580 , HOH A:684BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREALA A:53 , VAL A:57 , ARG A:154 , PHE A:156 , VAL A:182 , HOH A:655BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREMET A:71BINDING SITE FOR RESIDUE EOH A 407
08AC8SOFTWARELEU A:147 , GLN A:148 , ASP A:178 , HOH A:536 , HOH A:689 , GLN B:148 , ARG B:151BINDING SITE FOR RESIDUE EDO A 408
09AC9SOFTWARETHR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , HIS B:135 , GLN B:164 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , EDO B:404 , HOH B:541 , HOH B:654 , HOH B:657 , HOH B:661 , HOH B:662 , HOH B:671BINDING SITE FOR RESIDUE 2DN B 401
10BC1SOFTWAREASP A:174 , MET B:109 , TYR B:110 , GLY B:113 , LEU B:114 , ARG B:115 , THR B:116 , LYS B:145 , HOH B:523BINDING SITE FOR RESIDUE EDO B 402
11BC2SOFTWAREHOH B:643BINDING SITE FOR RESIDUE EDO B 403
12BC3SOFTWAREPRO B:38 , 2DN B:401 , HOH B:592BINDING SITE FOR RESIDUE EDO B 404
13BC4SOFTWAREGLY B:244 , ARG B:273 , GLY B:275 , HOH B:677BINDING SITE FOR RESIDUE EDO B 405
14BC5SOFTWAREPRO B:58 , ARG B:154 , PHE B:156BINDING SITE FOR RESIDUE 2DN B 406
15BC6SOFTWAREASN B:176 , HOH B:531BINDING SITE FOR RESIDUE EOH B 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MUH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:75 -Gly A:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MUH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MUH)

(-) Exons   (0, 0)

(no "Exon" information available for 4MUH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee..hhhhh...hhhhhh..hhhhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeee..........eeeeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4muh A   4 PAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGT 289
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283      


Chain B from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee......hhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4muh B   1 MAIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIG 288
                                    10        20        30        40        50        60        70||      94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284    
                                                                                                 71|                                                                                                                                                                                                          
                                                                                                  86
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MUH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MUH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MUH)

(-) Gene Ontology  (13, 20)

Asymmetric Unit(hide GO term definitions)

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    Ala A:75 - Gly A:76   [ RasMol ]  
 
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  6.3.2.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PANC_MYCTO | P9WIL4: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4mug 4mui 4muj 4muk 4mul 4mun
        PANC_MYCTU | P9WIL5: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4mug 4mui 4muj 4muk 4mul 4mun

(-) Related Entries Specified in the PDB File

4mq6 4mue 4muf 4mug 4mui 4muj 4muk 4mul 4mun