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(-) Description

Title :  PANTOTHENATE SYNTHASE IN COMPLEX WITH 2-(5-METHOXY-2-(TOSYLCARBAMOYL)-1H-INDOL-1-YL)ACETIC ACID
 
Authors :  H. L. Silvestre, T. L. Blundell
Date :  15 Sep 13  (Deposition) - 27 Aug 14  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Alpha Beta 3-Layer(Aba) Sandwich Rossmann Fold, Pantoate-Ligase, Atp Binding, Ligase, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Hung, H. L. Silvestre, S. Wen, G. P. George, J. Boland, T. L. Blundell, A. Ciulli, C. Abell
Optimization Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase Based On Group Efficiency Analysis.
Chemmedchem V. 11 38 2016
PubMed-ID: 26486566  |  Reference-DOI: 10.1002/CMDC.201500414

(-) Compounds

Molecule 1 - PANTOTHENATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.2.1
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
129W3Ligand/Ion(5-METHOXY-2-{[(4-METHYLPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO4Ligand/Ion1,2-ETHANEDIOL
3EOH8Ligand/IonETHANOL
Biological Unit 1 (3, 15)
No.NameCountTypeFull Name
129W3Ligand/Ion(5-METHOXY-2-{[(4-METHYLPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO4Ligand/Ion1,2-ETHANEDIOL
3EOH8Ligand/IonETHANOL
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
129W2Ligand/Ion(5-METHOXY-2-{[(4-METHYLPHENYL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
3EOH8Ligand/IonETHANOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:115 , THR A:117 , 29W A:405 , GLN B:119 , PRO B:120 , HOH B:506BINDING SITE FOR RESIDUE EOH A 401
02AC2SOFTWARETHR A:218 , HOH A:726 , HIS B:222 , THR B:225BINDING SITE FOR RESIDUE EOH A 402
03AC3SOFTWAREASN A:176 , HOH A:620 , HOH A:732 , ALA B:21BINDING SITE FOR RESIDUE EOH A 403
04AC4SOFTWAREPRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , TYR A:82 , PHE A:157 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , EOH A:410 , HOH A:658 , HOH A:730BINDING SITE FOR RESIDUE 29W A 404
05AC5SOFTWAREMET A:71 , LEU A:114 , PRO A:133 , THR A:134 , GLY A:138 , EOH A:401 , ILE B:3 , PRO B:4 , PHE B:6 , PRO B:8 , LEU B:27 , THR B:30 , ARG B:32 , GLN B:119BINDING SITE FOR RESIDUE 29W A 405
06AC6SOFTWAREMET A:109 , TYR A:110 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREGLU A:189 , ALA A:190 , GLY A:192 , HOH A:632BINDING SITE FOR RESIDUE EOH A 407
08AC8SOFTWARETYR A:82 , PRO A:83 , ARG A:84 , HOH A:587 , HOH A:611 , HOH A:664 , HOH A:727BINDING SITE FOR RESIDUE EOH A 408
09AC9SOFTWAREGLN A:148 , ARG A:151 , GLN B:148 , ASP B:178 , VAL B:179 , HOH B:540BINDING SITE FOR RESIDUE EOH A 409
10BC1SOFTWAREMET A:40 , GLN A:72 , VAL A:142 , 29W A:404 , HOH A:585BINDING SITE FOR RESIDUE EOH A 410
11BC2SOFTWAREALA A:226 , ALA B:208 , ALA B:242 , PRO B:243 , HOH B:604 , HOH B:605BINDING SITE FOR RESIDUE EOH A 411
12BC3SOFTWAREPRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , ASP B:161 , GLN B:164 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , EDO B:404 , HOH B:710 , HOH B:715BINDING SITE FOR RESIDUE 29W B 401
13BC4SOFTWAREASP A:174 , MET B:109 , TYR B:110 , GLY B:113 , LEU B:114 , ARG B:115 , THR B:116 , LYS B:145 , HOH B:533BINDING SITE FOR RESIDUE EDO B 402
14BC5SOFTWAREGLY B:244 , ALA B:246 , ARG B:273 , GLY B:275BINDING SITE FOR RESIDUE EDO B 403
15BC6SOFTWAREPHE B:67 , VAL B:142 , 29W B:401 , HOH B:534BINDING SITE FOR RESIDUE EDO B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MQ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MQ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 4MQ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee..hhhhh...hhhhhh..hhhhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...eeeeeeeeee..........eeeeeeeeee..eeeeeeeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mq6 A   3 IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGTFA 291
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         


Chain B from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mq6 B   1 MAIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIG 288
                                    10        20        30        40        50        60        70|       95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   
                                                                                                70|                                                                                                                                                                                                          
                                                                                                 86
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MQ6)

(-) Gene Ontology  (13, 20)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PANC_MYCTO | P9WIL4: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mue 4muf 4mug 4muh 4mui 4muj 4muk 4mul 4mun
        PANC_MYCTU | P9WIL5: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mue 4muf 4mug 4muh 4mui 4muj 4muk 4mul 4mun

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