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(-) Description

Title :  CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE IN COMPLEX WITH 2-(5-METHOXY-2-(MORPHOLINOSULFONYLCARBAMOYL)-1H-INDOL-1-YL)ACETIC ACID
 
Authors :  H. L. Silvestre, T. L. Blundell
Date :  21 Sep 13  (Deposition) - 27 Aug 14  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Alpha Beta 3-Layer(Aba) Sandwich Rossmann Fold, Pantoate-Ligase, Atp Binding, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Hung, H. L. Silvestre, S. Wen, G. P. George, J. Boland, T. L. Blundell, A. Ciulli, C. Abell
Optimization Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase Based On Group Efficiency Analysis.
Chemmedchem V. 11 38 2016
PubMed-ID: 26486566  |  Reference-DOI: 10.1002/CMDC.201500414

(-) Compounds

Molecule 1 - PANTOTHENATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.2.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: MT3707, MTCY07H7B.20, PANC, RV3602C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Synonym: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
12DK2Ligand/Ion{5-METHOXY-2-[(MORPHOLIN-4-YLSULFONYL)CARBAMOYL]-1H-INDOL-1-YL}ACETIC ACID
2EDO5Ligand/Ion1,2-ETHANEDIOL
3EOH3Ligand/IonETHANOL
4GOL2Ligand/IonGLYCEROL
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
12DK2Ligand/Ion{5-METHOXY-2-[(MORPHOLIN-4-YLSULFONYL)CARBAMOYL]-1H-INDOL-1-YL}ACETIC ACID
2EDO5Ligand/Ion1,2-ETHANEDIOL
3EOH3Ligand/IonETHANOL
4GOL2Ligand/IonGLYCEROL
Biological Unit 2 (4, 6)
No.NameCountTypeFull Name
12DK1Ligand/Ion{5-METHOXY-2-[(MORPHOLIN-4-YLSULFONYL)CARBAMOYL]-1H-INDOL-1-YL}ACETIC ACID
2EDO2Ligand/Ion1,2-ETHANEDIOL
3EOH2Ligand/IonETHANOL
4GOL1Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:218 , HOH A:759 , HIS B:222 , THR B:225BINDING SITE FOR RESIDUE EOH A 401
02AC2SOFTWAREASN A:176 , HOH A:622 , ALA B:21BINDING SITE FOR RESIDUE EOH A 402
03AC3SOFTWAREMET A:71 , TYR A:110 , HOH A:741BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREMET A:109 , TYR A:110 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , HOH A:742 , ASP B:174BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREMET A:40 , HIS A:44 , GLY A:46 , TYR A:82 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , ARG A:198 , GOL A:406 , HOH A:576 , HOH A:645 , HOH A:766 , HOH A:784BINDING SITE FOR RESIDUE 2DK A 405
06AC6SOFTWARETHR A:39 , MET A:40 , PHE A:67 , GLN A:72 , VAL A:142 , 2DK A:405 , HOH A:506 , HOH A:756BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWARESER B:24 , ARG B:25 , ARG B:28 , VAL B:150 , ARG B:151BINDING SITE FOR RESIDUE EOH B 401
08AC8SOFTWAREGLN A:148 , ARG A:151 , LEU B:147 , GLN B:148 , ARG B:151 , LEU B:177 , ASP B:178 , VAL B:179 , HOH B:506 , HOH B:547BINDING SITE FOR RESIDUE GOL B 402
09AC9SOFTWARETHR B:39 , MET B:40 , GLY B:41 , HIS B:44 , GLY B:46 , HIS B:47 , PRO B:185 , THR B:186 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , HOH B:747BINDING SITE FOR RESIDUE 2DK B 403
10BC1SOFTWAREGLY B:244 , ARG B:273 , GLY B:275 , HOH B:739BINDING SITE FOR RESIDUE EDO B 404
11BC2SOFTWAREPHE B:67 , VAL B:142 , LEU B:146 , HOH B:541 , HOH B:747BINDING SITE FOR RESIDUE EDO B 405
12BC3SOFTWAREPHE B:6 , LEU B:27 , HOH B:704BINDING SITE FOR RESIDUE EDO B 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MUG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MUG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MUG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MUG)

(-) Exons   (0, 0)

(no "Exon" information available for 4MUG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee..hhhhh...hhhhhh..hhhhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeeee..........eeeeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mug A   3 IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGT 289
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       


Chain B from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.hhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh...eee..hhhhhh......eee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mug B   1 MAIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIG 288
                                    10        20        30        40        50        60        70|       94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284    
                                                                                                70|                                                                                                                                                                                                           
                                                                                                 85
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MUG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MUG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MUG)

(-) Gene Ontology  (13, 20)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PANC_MYCTO | P9WIL4: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4muh 4mui 4muj 4muk 4mul 4mun
        PANC_MYCTU | P9WIL5: 1mop 1n2b 1n2e 1n2g 1n2h 1n2i 1n2j 1n2o 2a7x 2a84 2a86 2a88 3cov 3cow 3coy 3coz 3imc 3ime 3img 3iob 3ioc 3iod 3ioe 3isj 3iub 3iue 3ivc 3ivg 3ivx 3le8 4ddh 4ddk 4ddm 4de5 4ef6 4efk 4fzj 4g5f 4g5y 4mq6 4mue 4muf 4muh 4mui 4muj 4muk 4mul 4mun

(-) Related Entries Specified in the PDB File

4mq6 4mue 4muf 4muh 4mui 4muj 4muk 4mul