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(-) Description

Title :  CRYSTAL STRUCTURE OF MYO-INOSITOL DEHYDROGENASE FROM LACTOBACILLUS CASEI IN COMPLEX WITH NAD(H) AND MYO-INOSITOL
 
Authors :  D. Bertwistle, D. A. R. Sanders, D. R. J. Palmer
Date :  02 Sep 13  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nad, Nad(H), Sugar Alcohol Dehydrogenases, Rossmann Fold, Dehydrogenase, Nad Binding, Myo-Inositol Binding, Dehydrogenate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bertwistle, H. Aamudalapalli, D. A. R. Sanders, D. R. J. Palmer
Crystal Structure Of Myo-Inositol Dehydrogenase From Lactobacillus Casei In Complex With Nad(H) And Myo-Inositol
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSITOL 2-DEHYDROGENASE/D-CHIRO-INOSITOL 3-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-80L
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: IDH, IOLG, IOLG1, LCABL_02210
    Organism Scientific: LACTOBACILLUS CASEI
    Organism Taxid: 543734
    Strain: BL23
    Synonym: MYO-INOSITOL 2-DEHYDROGENASE/D-CHIRO-INOSITOL 3- DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric/Biological Unit (4, 26)
No.NameCountTypeFull Name
1GOL15Ligand/IonGLYCEROL
2INS1Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
3NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
4SO46Ligand/IonSULFATE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:11 , ALA A:12 , MET A:13 , ASP A:35 , ILE A:36 , VAL A:73 , SER A:74 , PHE A:75 , ALA A:78 , HIS A:79 , GLU A:96 , LYS A:97 , GLY A:124 , HIS A:176 , TRP A:274 , TYR A:282 , HOH A:558 , HOH A:632 , HOH A:649 , HOH A:714 , HOH A:738BINDING SITE FOR RESIDUE NAI A 401
02AC2SOFTWAREARG A:152 , ALA A:153 , SER A:154 , GLU A:241 , HOH A:612 , ARG C:152 , GLU C:241BINDING SITE FOR RESIDUE GOL A 402
03AC3SOFTWARELEU A:25 , ASN A:283 , THR A:284 , HOH A:516 , HOH A:633 , HOH A:726BINDING SITE FOR RESIDUE GOL A 403
04AC4SOFTWARELEU A:140 , ASP A:141 , PRO A:148 , LEU A:185 , HOH A:514 , SO4 C:405 , HOH C:613BINDING SITE FOR RESIDUE GOL A 404
05AC5SOFTWARETHR A:26 , GLY A:27 , HOH A:604 , HOH A:728 , HOH A:746 , THR D:26 , GLY D:27BINDING SITE FOR RESIDUE SO4 A 405
06AC6SOFTWAREARG A:198 , HOH A:577 , HOH A:614 , HOH A:664 , ALA C:147 , PRO C:148 , LYS C:220BINDING SITE FOR RESIDUE SO4 A 406
07AC7SOFTWAREGLY B:11 , ALA B:12 , MET B:13 , ASP B:35 , ILE B:36 , VAL B:73 , SER B:74 , PHE B:75 , GLY B:76 , ALA B:78 , HIS B:79 , GLU B:96 , LYS B:97 , GLY B:124 , MET B:126 , HIS B:176 , TYR B:282 , HOH B:519 , HOH B:619 , HOH B:621 , HOH B:623 , HOH B:629 , HOH B:639 , HOH B:658 , HOH B:681 , HOH B:757BINDING SITE FOR RESIDUE NAI B 401
08AC8SOFTWAREHOH A:518 , LEU B:140 , ASP B:141 , GLY B:143 , PRO B:148 , HOH B:600BINDING SITE FOR RESIDUE GOL B 402
09AC9SOFTWAREGLN A:266 , GLN A:267 , THR A:268 , ILE B:259 , GLN B:266 , THR B:268BINDING SITE FOR RESIDUE GOL B 403
10BC1SOFTWAREHIS B:155 , ASP B:172 , THR B:173 , HIS B:176 , TYR B:236 , HOH B:529 , HOH B:658BINDING SITE FOR RESIDUE GOL B 404
11BC2SOFTWAREILE B:275 , HOH B:629 , HOH B:635 , HOH B:662BINDING SITE FOR RESIDUE GOL B 405
12BC3SOFTWAREARG B:152 , ALA B:153 , SER B:154 , GLU B:241 , HOH B:599 , ARG D:152 , GLU D:241BINDING SITE FOR RESIDUE GOL B 406
13BC4SOFTWAREHOH B:625 , HOH B:769 , PHE C:75 , GLY C:76 , GLY C:77 , HOH C:773 , HOH C:796BINDING SITE FOR RESIDUE SO4 B 407
14BC5SOFTWAREARG B:198 , HOH B:595 , HOH B:760 , PRO D:148 , LYS D:220BINDING SITE FOR RESIDUE SO4 B 408
15BC6SOFTWAREHOH B:743 , GLY C:11 , ALA C:12 , MET C:13 , ASP C:35 , ILE C:36 , VAL C:73 , SER C:74 , PHE C:75 , GLY C:76 , ALA C:78 , HIS C:79 , GLU C:96 , LYS C:97 , GLY C:124 , MET C:126 , HIS C:176 , TYR C:282 , HOH C:508 , HOH C:578 , HOH C:615 , HOH C:632 , HOH C:634 , HOH C:636 , HOH C:709 , HOH C:771 , HOH C:776 , HOH C:777 , HOH C:806BINDING SITE FOR RESIDUE NAI C 401
16BC7SOFTWAREHOH C:597 , HOH C:600 , HOH C:620 , HOH C:679 , HOH C:759BINDING SITE FOR RESIDUE GOL C 402
17BC8SOFTWAREARG A:152 , GLU A:241 , ARG C:152 , ALA C:153 , SER C:154 , GLU C:241 , HOH C:688BINDING SITE FOR RESIDUE GOL C 403
18BC9SOFTWAREILE C:259 , GLN C:266 , THR C:268 , ILE D:259 , GLN D:266 , GLN D:267 , THR D:268BINDING SITE FOR RESIDUE GOL C 404
19CC1SOFTWAREALA A:147 , PRO A:148 , LYS A:220 , GOL A:404 , ARG C:198 , HOH C:613 , HOH C:718BINDING SITE FOR RESIDUE SO4 C 405
20CC2SOFTWAREHOH C:629 , HOH C:699 , GLY D:11 , ALA D:12 , MET D:13 , ASP D:35 , ILE D:36 , VAL D:73 , SER D:74 , PHE D:75 , ALA D:78 , HIS D:79 , GLU D:96 , LYS D:97 , MET D:126 , ASP D:172 , TRP D:274 , TYR D:282 , INS D:402 , HOH D:501 , HOH D:538 , HOH D:541 , HOH D:552 , HOH D:590 , HOH D:641 , HOH D:642 , HOH D:681 , HOH D:688 , HOH D:770 , HOH D:779BINDING SITE FOR RESIDUE NAI D 401
21CC3SOFTWARELYS D:97 , HIS D:155 , ASN D:157 , ASP D:172 , THR D:173 , HIS D:176 , TYR D:236 , NAI D:401 , HOH D:522 , HOH D:594 , HOH D:641BINDING SITE FOR RESIDUE INS D 402
22CC4SOFTWARETYR D:129 , GLU D:288 , SO4 D:407 , HOH D:678 , HOH D:799BINDING SITE FOR RESIDUE GOL D 403
23CC5SOFTWAREGLN D:280 , ASN D:283 , HOH D:628 , HOH D:744BINDING SITE FOR RESIDUE GOL D 404
24CC6SOFTWAREARG B:152 , GLU B:241 , ARG D:152 , ALA D:153 , SER D:154 , GLU D:241 , HOH D:561BINDING SITE FOR RESIDUE GOL D 405
25CC7SOFTWAREARG C:46 , SER D:165 , ASN D:205 , GLU D:206 , HOH D:526 , HOH D:706BINDING SITE FOR RESIDUE GOL D 406
26CC8SOFTWAREARG D:134 , TRP D:183 , GOL D:403BINDING SITE FOR RESIDUE SO4 D 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MIO)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Lys A:97 -Pro A:98
2Asp A:210 -Pro A:211
3Lys B:97 -Pro B:98
4Asp B:210 -Pro B:211
5Lys C:97 -Pro C:98
6Asp C:210 -Pro C:211
7Lys D:97 -Pro D:98
8Asp D:210 -Pro D:211

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MIO)

(-) Exons   (0, 0)

(no "Exon" information available for 4MIO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhh....ee..hhhhhhh.....eeee..hhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh......eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mio A   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain B from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....ee..hhhhhhh.....eeee..hhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mio B   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain C from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....ee..hhhhhhh.....eeee..hhhhhhhhhhhhh....eeee......hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhh......eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mio C   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain D from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....ee..hhhhhhh.....eeee..hhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh......eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mio D   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MIO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MIO)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MIO)

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  A0A0J9X1Y2_L | A0A0J9X1Y2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0J9X1Y2_L | A0A0J9X1Y2: 4mie 4min 4miy 4mjl

(-) Related Entries Specified in the PDB File

3cea 3mz0 3nt4 3ntq 4mie 4min 4miy 4mjl 4mkx 4mkz