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(-) Description

Title :  CRYSTAL STRUCTURE OF APO MYO-INOSITOL DEHYDROGENASE FROM LACTOBACILLUS CASEI
 
Authors :  D. Bertwistle, D. A. R. Sanders, D. R. J. Palmer
Date :  30 Aug 13  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nad, Sugar Alcohol Dehydrogenases, Rossmann Fold, Dehydrogenase, Nad Binding, Myo-Inositol Binding, Dehydrogenate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bertwistle, H. Aamudalapalli, D. A. R. Sanders, D. R. J. Palmer
Crystal Structure Of Apo Myo-Inositol Dehydrogenase From Lactobacillus Casei
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSITOL 2-DEHYDROGENASE/D-CHIRO-INOSITOL 3-DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-80L
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: IDH, IOLG, IOLG1, LCABL_02210
    Organism Scientific: LACTOBACILLUS CASEI
    Organism Taxid: 543734
    Strain: BL23
    Synonym: MYO-INOSITOL 2-DEHYDROGENASE/D-CHIRO-INOSITOL 3- DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric/Biological Unit (2, 18)
No.NameCountTypeFull Name
1GOL12Ligand/IonGLYCEROL
2SO46Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:155 , ASP A:172 , THR A:173 , HIS A:176 , HOH A:519BINDING SITE FOR RESIDUE GOL A 401
02AC2SOFTWAREARG A:152 , ALA A:153 , SER A:154 , LYS A:239 , GLU A:241 , HOH A:585 , ARG C:152 , GLU C:241BINDING SITE FOR RESIDUE GOL A 402
03AC3SOFTWARETHR A:34 , ASP A:35 , ILE A:36 , PRO A:56 , ASP A:57 , ASP A:58 , HOH A:601BINDING SITE FOR RESIDUE GOL A 403
04AC4SOFTWAREARG A:108 , ARG B:198 , PRO D:148 , LYS D:220 , HOH D:560BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWAREILE A:259 , GLN A:266 , GLN B:266 , THR B:268BINDING SITE FOR RESIDUE GOL B 401
06AC6SOFTWAREHOH B:562 , HOH B:644 , HOH C:535BINDING SITE FOR RESIDUE GOL B 402
07AC7SOFTWAREARG B:152 , ALA B:153 , SER B:154 , LYS B:239 , GLU B:241 , HOH B:560 , ARG D:152 , GLU D:241 , GOL D:401BINDING SITE FOR RESIDUE GOL B 403
08AC8SOFTWAREHIS B:155 , ASP B:172 , THR B:173 , HIS B:176 , TRP B:274 , HOH B:549BINDING SITE FOR RESIDUE GOL B 404
09AC9SOFTWAREARG A:198 , PRO C:148 , LYS C:220 , HOH C:528 , HOH C:640BINDING SITE FOR RESIDUE SO4 B 405
10BC1SOFTWAREHIS C:155 , ASP C:172 , THR C:173 , HIS C:176 , TYR C:236 , TRP C:274 , HOH C:505 , HOH C:563BINDING SITE FOR RESIDUE GOL C 401
11BC2SOFTWAREARG A:152 , GLU A:241 , ARG C:152 , ALA C:153 , SER C:154 , LYS C:239 , GLU C:241 , HOH C:592BINDING SITE FOR RESIDUE GOL C 402
12BC3SOFTWAREALA A:147 , PRO A:148 , LYS A:220 , ARG C:198 , HOH C:550BINDING SITE FOR RESIDUE SO4 C 403
13BC4SOFTWARETHR B:26 , GLY B:27 , THR C:26 , GLY C:27BINDING SITE FOR RESIDUE SO4 C 404
14BC5SOFTWAREARG B:152 , GLU B:241 , GOL B:403 , ARG D:152 , ALA D:153 , SER D:154 , GLU D:241BINDING SITE FOR RESIDUE GOL D 401
15BC6SOFTWAREHIS D:155 , ASP D:172 , THR D:173 , HIS D:176 , TRP D:274 , HOH D:507 , HOH D:696BINDING SITE FOR RESIDUE GOL D 402
16BC7SOFTWARETYR D:129 , ARG D:134 , GLU D:288 , SO4 D:404BINDING SITE FOR RESIDUE GOL D 403
17BC8SOFTWAREARG D:134 , TRP D:183 , GOL D:403BINDING SITE FOR RESIDUE SO4 D 404
18BC9SOFTWARETHR A:26 , GLY A:27 , HOH A:577 , HIS D:-2 , THR D:26 , GLY D:27BINDING SITE FOR RESIDUE SO4 D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MIE)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Lys A:97 -Pro A:98
2Asp A:210 -Pro A:211
3Lys B:97 -Pro B:98
4Asp B:210 -Pro B:211
5Lys C:97 -Pro C:98
6Asp C:210 -Pro C:211
7Lys D:97 -Pro D:98
8Asp D:210 -Pro D:211

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MIE)

(-) Exons   (0, 0)

(no "Exon" information available for 4MIE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh...ee..hhhhhhhh....eeee..hhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh......eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mie A   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain B from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....ee..hhhhhh......eeee.....hhhhhhhhhh....eeee......hhhhhhhhhhhhh......eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mie B   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain C from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhh...ee..hhhhhh......eeee..hhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mie C   1 MVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         


Chain D from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..hhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....ee..hhhhhhh.....eeee..hhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhhh......eeeeeeeee..........hhhhhh.hhhhhhhhhhhhh..eeeeeee................eeeeeee....eeeeeee.......eeeeeeee...eee........eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh..ee......hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mie D  -4 HHHGSMVVKVGVIGTGAMGRAHIDRLTNVLTGAEVVAVTDIDHEAAEAAVRDFHLNAKVYPDDTSLLQDPDIDAVFVVSFGGAHEATVLKALDTDKFIFTEKPLATTLEGAKRIVDKELTKSKKVIQVGFMRRYDQGIRALKEKLDTGIIGAPLVVRASHINPNVASNYSNEMAITDTLIHEIDEMHWLLDDEYTSIQITYPRQSAEVRNEGLHDPQLATLTTKKGTVIQVLVHVTAQYGYEVKLEVIGETGELQLPNYGLGPILRSNANQQTAVEMSWINRFIQAYNTEVQEFIDEVAKSEPPVGPSAWDGYIAAITAAAANRSQKDQETVLINVAGTPTFYQ 339
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MIE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MIE)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MIE)

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  4mie
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  A0A0J9X1Y2_L | A0A0J9X1Y2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0J9X1Y2_L | A0A0J9X1Y2: 4min 4mio 4miy 4mjl

(-) Related Entries Specified in the PDB File

3cea 3mz0 3nt4 3ntq 4min 4mio 4miy 4mjl 4mkx 4mkz