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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF JNK1 AND AX13587
 
Authors :  R. L. Walter, G. M. Ranieri, A. M. Riggs, H. Weissig, B. Li, K. R. Shreder
Date :  13 Jun 13  (Deposition) - 21 Aug 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase Fold, Protein Kinase, Jun-C, Phosphorylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Li, O. M. Cociorva, T. Nomanbhoy, H. Weissig, Q. Li, K. Nakamura, M. Liyanage, M. C. Zhang, A. Y. Shih, A. Aban, Y. Hu, J. Cajica, L. Pham, J. W. Kozarich, K. R. Shreder
Hit-To-Lead Optimization And Kinase Selectivity Of Imidazo[1, 2-A]Quinoxalin-4-Amine Derived Jnk1 Inhibitors.
Bioorg. Med. Chem. Lett. V. 23 5217 2013
PubMed-ID: 23916259  |  Reference-DOI: 10.1016/J.BMCL.2013.06.087

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Fragment: UNP RESIDUES 7-362
    Gene: MAPK8, JNK1, PRKM8, SAPK1, SAPK1C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 8, MAPK 8, JNK-46, STRESS-ACTIVATED PROTEIN KINASE 1C, SAPK1C, STRESS-ACTIVATED PROTEIN KINASE JNK1, C-JUN N- TERMINAL KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11V51Ligand/IonN-[1-(4-FLUOROPHENYL)CYCLOPROPYL]-4-[(TRANS-4-HYDROXYCYCLOHEXYL)AMINO]IMIDAZO[1,2-A]QUINOXALINE-8-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:37 , GLY A:38 , VAL A:40 , ALA A:53 , LYS A:55 , LYS A:56 , LEU A:57 , GLU A:109 , MET A:111 , ASP A:112 , ALA A:113 , ASN A:114 , GLN A:117 , ASN A:156 , LEU A:168 , HOH A:554 , HOH A:569 , HOH A:771 , HOH A:816BINDING SITE FOR RESIDUE 1V5 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L7F)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:33 -Ser A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L7F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L7F)

(-) Exons   (0, 0)

(no "Exon" information available for 4L7F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4l7fa_ A: automated matches                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee..eeeeee..eeeeeeee.....eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee............hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhh......hhhhhhhhhhh.........hhhhhhhhhhhhh........hhhhhhhh..hhhhhhhhhhh................hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l7f A   5 SLDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKELIYKEVMDWRKGIITIT 371
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367    
                                                                                                                                                                                                 172|                                                                                                                                                                                         
                                                                                                                                                                                                  186
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L7F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L7F)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:33 - Ser A:34   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK08_HUMAN | P45983: 1ukh 1uki 2g01 2gmx 2h96 2no3 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4e73 4g1w 4hys 4hyu 4izy 4qtd 4ux9 4yr8

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4L7F)