Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  NOVEL 4-ANILINOPYRIMIDINES AS POTENT JNK1 INHIBITORS
 
Authors :  C. Abad-Zapatero
Date :  24 Oct 06  (Deposition) - 17 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,F,G
Biol. Unit 1:  A,F  (1x)
Biol. Unit 2:  B,G  (1x)
Biol. Unit 3:  A,B,F,G  (1x)
Keywords :  Jnk1, C-Jun N-Terminal Kinase, Jnk1 Inhibitors, Anilinopyrimidines Jnk1 Inhibitors, Signaling Protein/Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Liu, S. Wang, J. E. Clampit, R. J. Gum, D. L. Haasch, C. M. Rondinone, J. M. Trevillyan, C. Abad-Zapatero, E. H. Fry, H. L. Sham, G. Liu
Discovery Of A New Class Of 4-Anilinopyrimidines As Potent C-Jun N-Terminal Kinase Inhibitors: Synthesis And Sar Studies.
Bioorg. Med. Chem. Lett. V. 17 668 2007
PubMed-ID: 17107797  |  Reference-DOI: 10.1016/J.BMCL.2006.10.093
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    ChainsA, B
    EC Number2.7.11.24
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentJNK1 RESIDUES 1-364
    GeneMAPK8, JNK1, PRKM8
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSTRESS-ACTIVATED PROTEIN KINASE JNK1, C-JUN N- TERMINAL KINASE 1, JNK-46
 
Molecule 2 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1
    ChainsF, G
    EngineeredYES
    FragmentPEPJIP1 PEPTIDE
    Other DetailsTHE SEQUENCE IS FOUND NATURALLY IN HOMO SAPIENS
    SynonymJNK-INTERACTING PROTEIN 1, JIP-1, JNK MAP KINASE SCAFFOLD PROTEIN 1, ISLET-BRAIN 1, IB-1, MITOGEN-ACTIVATED PROTEIN KINASE 8-INTERACTING PROTEIN 1
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABFG
Biological Unit 1 (1x)A F 
Biological Unit 2 (1x) B G
Biological Unit 3 (1x)ABFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
18592Ligand/Ion2-({2-[(3-HYDROXYPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)BENZAMIDE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
18591Ligand/Ion2-({2-[(3-HYDROXYPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)BENZAMIDE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
18591Ligand/Ion2-({2-[(3-HYDROXYPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)BENZAMIDE
2SO42Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
18592Ligand/Ion2-({2-[(3-HYDROXYPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)BENZAMIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:189 , ARG A:192 , TYR A:230 , THR B:255BINDING SITE FOR RESIDUE SO4 A 701
2AC2SOFTWAREARG A:69 , ARG A:150BINDING SITE FOR RESIDUE SO4 A 702
3AC3SOFTWARETHR A:255 , ARG B:189 , ARG B:192 , TYR B:230BINDING SITE FOR RESIDUE SO4 B 801
4AC4SOFTWARELYS B:68 , ARG B:150 , MET B:182BINDING SITE FOR RESIDUE SO4 B 802
5AC5SOFTWAREGLY A:33 , VAL A:40 , LYS A:55 , MET A:108 , GLU A:109 , LEU A:110 , MET A:111 , ASP A:112 , ASN A:114 , LEU A:168 , ASP A:169BINDING SITE FOR RESIDUE 859 A 901
6AC6SOFTWAREARG A:50 , ILE B:32 , GLY B:33 , VAL B:40 , ILE B:86 , MET B:108 , GLU B:109 , LEU B:110 , MET B:111 , ASP B:112 , ALA B:113 , ASN B:114 , VAL B:158 , LEU B:168BINDING SITE FOR RESIDUE 859 B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NO3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NO3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042258G171SMK08_HUMANUnclassified  ---A/BG171S
2UniProtVAR_042259G177RMK08_HUMANUnclassified  ---A/BG177R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042258G171SMK08_HUMANUnclassified  ---AG171S
2UniProtVAR_042259G177RMK08_HUMANUnclassified  ---AG177R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042258G171SMK08_HUMANUnclassified  ---BG171S
2UniProtVAR_042259G177RMK08_HUMANUnclassified  ---BG177R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042258G171SMK08_HUMANUnclassified  ---A/BG171S
2UniProtVAR_042259G177RMK08_HUMANUnclassified  ---A/BG177R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MAPKPS01351 MAP kinase signature.MK08_HUMAN61-163
 
  2A:61-163
B:61-163
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MK08_HUMAN147-159
 
  2A:147-159
B:147-159
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MAPKPS01351 MAP kinase signature.MK08_HUMAN61-163
 
  1A:61-163
-
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MK08_HUMAN147-159
 
  1A:147-159
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MAPKPS01351 MAP kinase signature.MK08_HUMAN61-163
 
  1-
B:61-163
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MK08_HUMAN147-159
 
  1-
B:147-159
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MAPKPS01351 MAP kinase signature.MK08_HUMAN61-163
 
  2A:61-163
B:61-163
2PROTEIN_KINASE_STPS00108 Serine/Threonine protein kinases active-site signature.MK08_HUMAN147-159
 
  2A:147-159
B:147-159

(-) Exons   (10, 20)

Asymmetric Unit (10, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003741891cENSE00001462753chr10:49514733-49514864132MK08_HUMAN-00--
1.5bENST000003741895bENSE00002166090chr10:49609655-49609825171MK08_HUMAN1-41412A:8-41
B:7-41
34
35
1.6ENST000003741896ENSE00000883668chr10:49612895-49613024130MK08_HUMAN41-84442A:41-84
B:41-84
44
44
1.7ENST000003741897ENSE00001772891chr10:49617922-4961798059MK08_HUMAN85-104202A:85-104
B:85-104
20
20
1.8cENST000003741898cENSE00001723558chr10:49618073-49618211139MK08_HUMAN104-150472A:104-150
B:104-150
47
47
1.9bENST000003741899bENSE00001657864chr10:49628198-49628363166MK08_HUMAN151-206562A:151-206
B:151-206
56
56
1.10ENST0000037418910ENSE00001705464chr10:49632131-4963220272MK08_HUMAN206-230252A:206-230
B:206-230
25
25
1.12eENST0000037418912eENSE00000702776chr10:49633931-49634113183MK08_HUMAN230-291622A:230-291
B:230-291
62
62
1.12gENST0000037418912gENSE00001263989chr10:49634423-49634547125MK08_HUMAN291-332422A:291-332
B:291-332
42
42
1.12jENST0000037418912jENSE00000883675chr10:49635123-4963518664MK08_HUMAN333-354222A:333-354
B:333-354
22
22
1.13bENST0000037418913bENSE00000702787chr10:49639236-4963931378MK08_HUMAN354-380272A:354-364
B:354-363
11
10
1.14gENST0000037418914gENSE00001462730chr10:49642927-496474034477MK08_HUMAN380-427480--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:357
 aligned with MK08_HUMAN | P45983 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:357
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       
           MK08_HUMAN     8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKELIYKEVMDLE 364
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2no3A01 A:8-112 Phosphorylase Kinase; domain 1                                                           2no3A02 A:113-332 Transferase(Phosphotransferase) domain 1                                                                                                                                                                  -------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....ee.....ee...eeee....eeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee...........eeeee....eehhhhhh...hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee.....eee......ee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh.hhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhh.hhhhhhhh..hhhhhhhhhhh................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------S-----R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------MAPK  PDB: A:61-163 UniProt: 61-163                                                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5b  PDB: A:8-41            -------------------------------------------Exon 1.7            -----------------------------------------------------------------------------------------------------Exon 1.10  PDB: A:206-230------------------------------------------------------------Exon 1.12g  PDB: A:291-332                Exon 1.12j            ---------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.6  PDB: A:41-84 UniProt: 41-84       -------------------Exon 1.8c  PDB: A:104-150 UniProt: 104-150     Exon 1.9b  PDB: A:151-206 UniProt: 151-206              -----------------------Exon 1.12e  PDB: A:230-291 UniProt: 230-291                   --------------------------------------------------------------Exon 1.13b  Transcript 1 (2)
                 2no3 A   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKELIYKEVMDLE 364
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       

Chain B from PDB  Type:PROTEIN  Length:357
 aligned with MK08_HUMAN | P45983 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:357
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       
           MK08_HUMAN     7 DNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKELIYKEVMDL 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2no3B01 B:7-112 Phosphorylase Kinase; domain 1                                                            2no3B02 B:113-332 Transferase(Phosphotransferase) domain 1                                                                                                                                                                  ------------------------------- CATH domains
           Pfam domains (1) -------------------Pkinase-2no3B01 B:26-321                                                                                                                                                                                                                                                                                ------------------------------------------ Pfam domains (1)
           Pfam domains (2) -------------------Pkinase-2no3B02 B:26-321                                                                                                                                                                                                                                                                                ------------------------------------------ Pfam domains (2)
         Sec.struct. author ...................eeeeeeee.....eeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhh.......eeeee...........eeeeee....hhhhhhh...hhhhhhhhhhhhhhhhhhhhh........hhh.ee.......ee....................hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhh............hhhhh.........hhhhhhhhhhhhh........hhhhhhhhhhhhh.........................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------S-----R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------MAPK  PDB: B:61-163 UniProt: 61-163                                                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.5b  PDB: B:7-41 [INCOMPLETE]-------------------------------------------Exon 1.7            -----------------------------------------------------------------------------------------------------Exon 1.10  PDB: B:206-230------------------------------------------------------------Exon 1.12g  PDB: B:291-332                Exon 1.12j            --------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.6  PDB: B:41-84 UniProt: 41-84       -------------------Exon 1.8c  PDB: B:104-150 UniProt: 104-150     Exon 1.9b  PDB: B:151-206 UniProt: 151-206              -----------------------Exon 1.12e  PDB: B:230-291 UniProt: 230-291                   --------------------------------------------------------------Exon 1.13b Transcript 1 (2)
                 2no3 B   7 DNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKELIYKEVMDL 363
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       

Chain F from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 2no3 F 554 PKRPTTLNLF 563
                                   563

Chain G from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 2no3 G 554 PKRPTTLNLF 563
                                   563

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2NO3)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (MK08_HUMAN | P45983)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004705    JUN kinase activity    Catalysis of the reaction: JUN + ATP = JUN phosphate + ADP. This reaction is the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors.
    GO:0004707    MAP kinase activity    Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0042826    histone deacetylase binding    Interacting selectively and non-covalently with the enzyme histone deacetylase.
    GO:0035033    histone deacetylase regulator activity    Modulates the activity of histone deacetylase.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0007254    JNK cascade    An intracellular protein kinase cascade containing at least a JNK (a MAPK), a JNKK (a MAPKK) and a JUN3K (a MAP3K). The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0007258    JUN phosphorylation    The process of introducing a phosphate group into a JUN protein.
    GO:0071222    cellular response to lipopolysaccharide    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0071260    cellular response to mechanical stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0032091    negative regulation of protein binding    Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0018107    peptidyl-threonine phosphorylation    The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0031281    positive regulation of cyclase activity    Any process that activates or increases the activity of a cyclase.
    GO:0090045    positive regulation of deacetylase activity    Any process that activates or increases the frequency, rate or extent of deacetylase activity, the catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:1900740    positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway    Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway.
    GO:0051247    positive regulation of protein metabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0042752    regulation of circadian rhythm    Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0031063    regulation of histone deacetylation    Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones.
    GO:0016241    regulation of macroautophagy    Any process that modulates the frequency, rate or extent of macroautophagy.
    GO:0032880    regulation of protein localization    Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
    GO:0051090    regulation of sequence-specific DNA binding transcription factor activity    Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0009411    response to UV    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0048511    rhythmic process    Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    859  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2no3)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2no3
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  MK08_HUMAN | P45983
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.11.24
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  0018
    Age Related InformationGenAge
  0163
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  MK08_HUMAN | P45983
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK08_HUMAN | P459831ukh 1uki 2g01 2gmx 2h96 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4e73 4g1w 4hys 4hyu 4izy 4l7f 4qtd 4ux9 4yr8

(-) Related Entries Specified in the PDB File

2g01 PYRAZOLOQUINOLONES AS NOVEL, SELECTIVE JNK1 INHIBITORS
2gmx SELECTIVE AMINOPYRIDINE-BASED C-JUN N-TERMINAL KINASE INHIBITORS WITH CELLULAR ACTIVITY
2h96 HIGHLY SELECTIVE AND ORALLY BIOAVAILABLE PYRIDINE CARBOXAMIDE JNK1 INHIHIBITORS