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(-) Description

Title :  CRYSTAL STRUCTURE OF JNK1BETA-JIP IN COMPLEX WITH AN AZAQUINOLONE INHBITOR
 
Authors :  C. M. Lukacs, C. A. Janson
Date :  16 Mar 12  (Deposition) - 29 May 13  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.27
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. E. Haynes, N. R. Scott, L. C. Chen, C. A. Janson, J. K. Li, C. M. Lukacs, A. Railkar, E. Tozzo, T. Whittard, N. F. Brown, A. W. Cheung
Identification Of An Adamantyl Azaquinolone Jnk Selective Inhibitor.
Acs Med Chem Lett V. 3 764 2012
PubMed-ID: 24900545  |  Reference-DOI: 10.1021/ML300175C

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAPK8, JNK1, PRKM8, SAPK1, SAPK1C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 8, MAPK 8, JNK-46, STRESS-ACTIVATED PROTEIN KINASE 1C, SAPK1C, STRESS-ACTIVATED PROTEIN KINASE JNK1, C-JUN N- TERMINAL KINASE 1
 
Molecule 2 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JIP-1, JNK-INTERACTING PROTEIN 1, ISLET-BRAIN 1, IB-1, JNK MAP KINASE SCAFFOLD PROTEIN 1, MITOGEN-ACTIVATED PROTEIN KINASE 8- INTERACTING PROTEIN 1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10NR1Ligand/IonMETHYL 3-(4-{[(1R,2S,3S,5S,7S)-5-AMINOTRICYCLO[3.3.1.1~3,7~]DEC-2-YL]CARBAMOYL}BENZYL)-4-OXO-1-PHENYL-1,4-DIHYDRO-1,8-NAPHTHYRIDINE-2-CARBOXYLATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:32 , GLY A:33 , VAL A:40 , ALA A:42 , ALA A:53 , MET A:108 , GLU A:109 , MET A:111 , ASP A:112 , ALA A:113 , ASN A:114 , VAL A:158 , LEU A:168 , ASN A:262 , HOH A:518 , HOH A:573 , HOH A:577BINDING SITE FOR RESIDUE 0NR A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E73)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E73)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E73)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E73)

(-) Exons   (0, 0)

(no "Exon" information available for 4E73)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee............eeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..........hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh...........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e73 A   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEREHTIEEWKELIYKEVM 361
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167     ||192       202       212       222       232       242       252       262       272       290       300       310       320       330||     353        
                                                                                                                                                                                               173|                                                                                         281|                                      331|                
                                                                                                                                                                                                189                                                                                          290                                       345                


Chain B from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4e73 B 154 PKRPTTLNL 162
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E73)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E73)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E73)

(-) Gene Ontology  (71, 78)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JIP1_HUMAN | Q9UQF2: 2g01 2gmx 2h96 3oxi 3ptg 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4g1w 4h39 4hys 4hyu 4izy
        MK08_HUMAN | P45983: 1ukh 1uki 2g01 2gmx 2h96 2no3 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4g1w 4hys 4hyu 4izy 4l7f 4qtd 4ux9 4yr8

(-) Related Entries Specified in the PDB File

1ukh