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(-) Description

Title :  CRYSTAL STRUCTURE OF JNK1 IN COMPLEX WITH JIP1 PEPTIDE AND 4-{4-[4-(4-METHANESULFONYL-PIPERIDIN-1-YL)-INDOL-1-YL]-PYRIMIDIN-2-YLAMINO}-CYCLOHEXAN
 
Authors :  A. Kuglstatter, A. Shao
Date :  30 Jan 13  (Deposition) - 18 Dec 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Gong, X. Han, T. Silva, Y. C. Tan, B. Goyal, P. Tivitmahaisoon, A. Trejo, W. Palmer, H. Hogg, A. Jahagir, M. Alam, P. Wagner, K. Stein, L. Filonova, B. Loe, F. Makra, D. Rotstein, L. Rapatova, J. Dunn, F. Zuo J. Dal Porto, B. Wong, S. Jin, A. Chang, P. Tran, G. Hsieh, L. Niu, A. Shao, D. Reuter, J. Hermann, A. Kuglstatter, D. Goldstein
Development Of Indole/Indazole-Aminopyrimidines As Inhibitors Of C-Jun N-Terminal Kinase (Jnk): Optimization For Jnk Potency And Physicochemical Properties.
Bioorg. Med. Chem. Lett. V. 23 3565 2013
PubMed-ID: 23664880  |  Reference-DOI: 10.1016/J.BMCL.2013.04.029

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    Chains: A
    EC Number: 2.7.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-369
    Gene: MAPK8, HCG_23734
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MITOGEN-ACTIVATED PROTEIN KINASE 8 ISOFORM JNK1 BETA2, MITOGEN-ACTIVATED PROTEIN KINASE 8, ISOFORM CRA_D, CDNA FLJ77387, HIGHLY SIMILAR TO HOMO SAPIENS MITOGEN-ACTIVATED PROTEIN KINASE 8 (MAPK8), TRANSCRIPT VARIANT 4, MRNA
 
Molecule 2 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1
    Chains: B
    Engineered: YES
    Fragment: RESIDUES 157-167
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CHEMICAL SYNTHESIS
    Synonym: JIP-1, JNK-INTERACTING PROTEIN 1, ISLET-BRAIN 1, IB-1, JNK MAP KINASE SCAFFOLD PROTEIN 1, MITOGEN-ACTIVATED PROTEIN KINASE 8- INTERACTING PROTEIN 1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11J21Ligand/IonTRANS-4-[(4-{4-[4-(METHYLSULFONYL)PIPERIDIN-1-YL]-1H-INDOL-1-YL}PYRIMIDIN-2-YL)AMINO]CYCLOHEXANOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:32 , SER A:34 , GLY A:35 , ALA A:36 , GLN A:37 , GLY A:38 , VAL A:40 , LYS A:55 , GLU A:109 , MET A:111 , LEU A:168 , THR A:258 , ASN A:262BINDING SITE FOR RESIDUE 1J2 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IZY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IZY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IZY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IZY)

(-) Exons   (0, 0)

(no "Exon" information available for 4IZY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeeee...eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eee............eeeee...ee..hhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..........hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhh........hhhhhhhhhhh..hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4izy A   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPREHTIEEWKELIYKEVM 361
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    || 192       202       212       222       232       242       252       262       272       289       299       309       319       329    || 349       359  
                                                                                                                                                                                              172|                                                                                          281|                                          334|                
                                                                                                                                                                                               188                                                                                           289                                           345                


Chain B from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4izy B 154 PKRPTTLNL 162
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IZY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IZY)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (73, 89)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A1L4K2_HUMAN | A1L4K2: 2xrw 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4g1w 4hys 4hyu
        JIP1_HUMAN | Q9UQF2: 2g01 2gmx 2h96 3oxi 3ptg 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4e73 4g1w 4h39 4hys 4hyu
        MK08_HUMAN | P45983: 1ukh 1uki 2g01 2gmx 2h96 2no3 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4e73 4g1w 4hys 4hyu 4l7f 4qtd 4ux9 4yr8

(-) Related Entries Specified in the PDB File

4hys 4hyu