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(-) Description

Title :  CRYSTAL STRUCTURE OF JNK1 IN COMPLEX WITH JIP1 PEPTIDE AND 4-(4-INDAZOL-1-YL-PYRIMIDIN-2-YLAMINO)-CYCLOHEXAN
 
Authors :  A. Kuglstatter, C. Janson
Date :  14 Nov 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. S. Palmer, M. Alam, H. B. Arzeno, K. C. Chang, J. P. Dunn, D. M. Goldstein, L. Gong, B. Goyal, J. C. Hermann, J. H. Hogg, G. Hsieh, A. Jahangir, C. Janson, S. Jin, R. Ursula Kammlott, A. Kuglstatter, C. Lukacs, C. Michoud, L. Niu, D. C. Reuter, A. Shao, T. Silva, T. A. Trejo-Martin, K. Stein, Y. C. Tan, P. Tivitmahaisoon, P. Tran, P. Wagner, P. Weller, S. Y. Wu
Development Of Amino-Pyrimidine Inhibitors Of C-Jun N-Terminal Kinase (Jnk): Kinase Profiling Guided Optimization Of A 1, 2, 3-Benzotriazole Lead.
Bioorg. Med. Chem. Lett. V. 23 1486 2013
PubMed-ID: 23352510  |  Reference-DOI: 10.1016/J.BMCL.2012.12.047

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 8
    ChainsA
    EC Number2.7.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 1-369
    GeneMAPK8, HCG_23734
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMITOGEN-ACTIVATED PROTEIN KINASE 8 ISOFORM JNK1 BETA2, MITOGEN-ACTIVATED PROTEIN KINASE 8, ISOFORM CRA_D, CDNA FLJ77387, HIGHLY SIMILAR TO HOMO SAPIENS MITOGEN-ACTIVATED PROTEIN KINASE 8 (MAPK8), TRANSCRIPT VARIANT 4, MRNA
 
Molecule 2 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1
    ChainsB
    EngineeredYES
    FragmentRESIDUES 157-167
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCHEMICAL SYNTHESIS
    SynonymJIP-1, JNK-INTERACTING PROTEIN 1, ISLET-BRAIN 1, IB-1, JNK MAP KINASE SCAFFOLD PROTEIN 1, MITOGEN-ACTIVATED PROTEIN KINASE 8- INTERACTING PROTEIN 1
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11BJ1Ligand/IonTRANS-4-{[4-(1H-INDAZOL-1-YL)PYRIMIDIN-2-YL]AMINO}CYCLOHEXANOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:32 , VAL A:40 , ALA A:53 , GLU A:109 , LEU A:110 , MET A:111 , LEU A:168BINDING SITE FOR RESIDUE 1BJ A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HYS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HYS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HYS)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4HYS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeeee...eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee............eeeee...eehhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..........hhhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhh..hhhhhhhhh........hhhhhhhhhhh..hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hys A   8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPREHTIEEWKELIYKEVM 361
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167    || 192       202       212       222       232       242       252       262       272       290       300       310       320       330   ||  350       360 
                                                                                                                                                                                              172|                                                                                          281|                                         334|                
                                                                                                                                                                                               188                                                                                           290                                          345                

Chain B from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4hys B 154 PKRPTTLNL 162

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HYS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HYS)

(-) Gene Ontology  (73, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A1L4K2_HUMAN | A1L4K22xrw 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4g1w 4hyu 4izy
        JIP1_HUMAN | Q9UQF22g01 2gmx 2h96 3oxi 3ptg 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4e73 4g1w 4h39 4hyu 4izy
        MK08_HUMAN | P459831ukh 1uki 2g01 2gmx 2h96 2no3 2xrw 2xs0 3elj 3o17 3o2m 3pze 3v3v 3vud 3vug 3vuh 3vui 3vuk 3vul 3vum 4awi 4e73 4g1w 4hyu 4izy 4l7f 4qtd 4ux9 4yr8

(-) Related Entries Specified in the PDB File

4hy4