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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL) DECAHYDROQUINOLIN-1-IUM
 
Authors :  M. Chen, J. A. Faraldos, N. Al-Lami, M. Janvier, E. L. D'Antonio, D. E. Ca R. K. Allemann, D. W. Christianson
Date :  22 May 13  (Deposition) - 14 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Class I Terpene Cyclase, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Cane, R. K. Allemann, D. W. Christianson
Mechanistic Insights From The Binding Of Substrate And Carbocation Intermediate Analogues To Aristolochene Synthase.
Biochemistry V. 52 5441 2013
PubMed-ID: 23905850  |  Reference-DOI: 10.1021/BI400691V

(-) Compounds

Molecule 1 - ARISTOLOCHENE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 14-320
    Gene: ARI1
    Organism Scientific: ASPERGILLUS TERREUS
    Organism Taxid: 33178
    Synonym: AS, SESQUITERPENE CYCLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric Unit (4, 25)
No.NameCountTypeFull Name
11SS4Ligand/Ion(1R,4AS,7S,8AR)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLINIUM
2GOL4Ligand/IonGLYCEROL
3MG13Ligand/IonMAGNESIUM ION
4POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
11SS2Ligand/Ion(1R,4AS,7S,8AR)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLINIUM
2GOL3Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
11SS2Ligand/Ion(1R,4AS,7S,8AR)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLINIUM
2GOL1Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:84 , ARG A:169 , ASN A:213 , SER A:217 , LYS A:220 , GLU A:221 , ARG A:308 , TYR A:309 , MG A:402 , MG A:403 , MG A:404 , 1SS A:408 , HOH A:668 , HOH A:685 , HOH A:686 , HOH A:687 , HOH A:688 , HOH A:689 , HOH A:691BINDING SITE FOR RESIDUE POP A 401
02AC2SOFTWAREASP A:84 , POP A:401 , MG A:404 , GOL A:405 , HOH A:688 , HOH A:689 , HOH A:690 , HOH A:691BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREASN A:213 , SER A:217 , GLU A:221 , POP A:401 , HOH A:687BINDING SITE FOR RESIDUE MG A 403
04AC4SOFTWAREASP A:84 , POP A:401 , MG A:402 , HOH A:685 , HOH A:686 , HOH A:691BINDING SITE FOR RESIDUE MG A 404
05AC5SOFTWAREASP A:84 , GLU A:88 , GLN A:151 , ARG A:156 , GLY A:232 , MG A:402 , HOH A:543 , HOH A:690 , HOH A:691BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWAREARG A:56 , LEU A:301 , GLU C:127 , HOH C:613 , HOH C:697BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWAREHOH A:792 , HOH A:793 , HOH A:794 , HOH A:795 , HOH A:796 , HOH A:798BINDING SITE FOR RESIDUE MG A 407
08AC8SOFTWARELEU A:77 , LEU A:80 , PHE A:81 , PHE A:147 , VAL A:173 , ASN A:213 , POP A:401BINDING SITE FOR RESIDUE 1SS A 408
09AC9SOFTWARELEU B:77 , LEU B:80 , PHE B:81 , VAL B:173 , LEU B:178 , POP B:402BINDING SITE FOR RESIDUE 1SS B 401
10BC1SOFTWAREASP B:84 , ARG B:169 , ASN B:213 , SER B:217 , LYS B:220 , GLU B:221 , ARG B:308 , TYR B:309 , 1SS B:401 , MG B:403 , MG B:404 , MG B:405 , HOH B:710 , HOH B:711 , HOH B:712 , HOH B:715 , HOH B:716 , HOH B:717BINDING SITE FOR RESIDUE POP B 402
11BC2SOFTWAREASP B:84 , POP B:402 , MG B:405 , HOH B:713 , HOH B:714 , HOH B:715 , HOH B:716BINDING SITE FOR RESIDUE MG B 403
12BC3SOFTWAREASN B:213 , SER B:217 , GLU B:221 , POP B:402 , HOH B:710BINDING SITE FOR RESIDUE MG B 404
13BC4SOFTWAREASP B:84 , POP B:402 , MG B:403 , HOH B:711 , HOH B:716 , HOH B:717BINDING SITE FOR RESIDUE MG B 405
14BC5SOFTWAREGLY B:108 , TYR B:123 , GLU B:127 , HOH B:620BINDING SITE FOR RESIDUE GOL B 406
15BC6SOFTWAREASP C:84 , ARG C:169 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ARG C:308 , TYR C:309 , MG C:402 , MG C:403 , MG C:404 , 1SS C:406 , HOH C:617 , HOH C:634 , HOH C:635 , HOH C:638BINDING SITE FOR RESIDUE POP C 401
16BC7SOFTWAREASP C:84 , POP C:401 , MG C:404 , HOH C:636 , HOH C:637 , HOH C:638 , HOH C:639BINDING SITE FOR RESIDUE MG C 402
17BC8SOFTWAREASN C:213 , SER C:217 , GLU C:221 , POP C:401 , HOH C:642BINDING SITE FOR RESIDUE MG C 403
18BC9SOFTWAREASP C:84 , POP C:401 , MG C:402 , HOH C:634 , HOH C:635 , HOH C:637BINDING SITE FOR RESIDUE MG C 404
19CC1SOFTWAREARG B:107 , GLU B:142 , ARG B:149 , HOH B:673 , ARG C:197 , LEU C:275 , HOH C:675BINDING SITE FOR RESIDUE GOL C 405
20CC2SOFTWARELEU C:77 , LEU C:80 , PHE C:81 , VAL C:173 , ASN C:213 , POP C:401BINDING SITE FOR RESIDUE 1SS C 406
21CC3SOFTWAREASP D:84 , ARG D:169 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:402 , MG D:403 , MG D:404 , 1SS D:405 , HOH D:590 , HOH D:598 , HOH D:601 , HOH D:603 , HOH D:636BINDING SITE FOR RESIDUE POP D 401
22CC4SOFTWAREASP D:84 , POP D:401 , MG D:404 , HOH D:599 , HOH D:600 , HOH D:601 , HOH D:603BINDING SITE FOR RESIDUE MG D 402
23CC5SOFTWAREASN D:213 , SER D:217 , GLU D:221 , POP D:401 , HOH D:602BINDING SITE FOR RESIDUE MG D 403
24CC6SOFTWAREASP D:84 , GLU D:88 , POP D:401 , MG D:402 , HOH D:598 , HOH D:603 , HOH D:636BINDING SITE FOR RESIDUE MG D 404
25CC7SOFTWARETYR D:61 , LEU D:77 , LEU D:80 , PHE D:81 , VAL D:173 , ASN D:213 , POP D:401BINDING SITE FOR RESIDUE 1SS D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KVD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KVD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KVD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KVD)

(-) Exons   (0, 0)

(no "Exon" information available for 4KVD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvda_ A: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvd A   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvdb_ B: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvd B   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvdc_ C: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvd C   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain D from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvdd_ D: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvd D   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KVD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KVD)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARIS_ASPTE | Q9UR08: 2e4o 2oa6 3bnx 3bny 3cke 4kux 4kvi 4kvw 4kvy 4kwd 5imi 5imn 5imp 5in8 5ivg

(-) Related Entries Specified in the PDB File

3bny CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH 2F-FPP
4kux CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH FSPP
4kvi CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8- OCTAHYDROQUINOLIN-1-IUM