4KUX - JenaLib

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Title :   CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH FARNESYL THIOLODIPHOSPHATE (FSPP)

Authors :   M. Chen, J. A. Faraldos, N. Al-Lami, M. Janvier, E. L. D'Antonio, D. E. Ca R. K. Allemann, D. W. Christianson

Date :   22 May 13 (Deposition) - 14 Aug 13 (Release) - 28 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Class I Terpene Cyclase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Cane, R. K. Allemann, D. W. Christianson
Mechanistic Insights From The Binding Of Substrate And Carbocation Intermediate Analogues To Aristolochene Synthase.
Biochemistry V. 52 5441 2013
PubMed-ID: 23905850 | Reference-DOI: 10.1021/BI400691V

Molecule 1 - ARISTOLOCHENE SYNTHASE
	Chains	:	A, B, C, D
	EC Number	:	4.2.3.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 14-320
	Gene	:	ARI1
	Organism Scientific	:	ASPERGILLUS TERREUS
	Organism Taxid	:	33178
	Synonym	:	AS, SESQUITERPENE CYCLASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	FPS	4	Ligand/Ion	S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE
2	GOL	2	Ligand/Ion	GLYCEROL
3	MG	12	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	FPS	2	Ligand/Ion	S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE
2	GOL	1	Ligand/Ion	GLYCEROL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	FPS	2	Ligand/Ion	S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL]TRIHYDROGEN THIODIPHOSPHATE
2	GOL	1	Ligand/Ion	GLYCEROL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:84 , MG A:702 , FPS A:704 , HOH A:993 , HOH A:994 , HOH A:995	BINDING SITE FOR RESIDUE MG A 701
02	AC2	SOFTWARE	ASP A:84 , MG A:701 , FPS A:704 , HOH A:995 , HOH A:996 , HOH A:1004 , HOH A:1006	BINDING SITE FOR RESIDUE MG A 702
03	AC3	SOFTWARE	ASN A:213 , SER A:217 , GLU A:221 , FPS A:704 , HOH A:1109	BINDING SITE FOR RESIDUE MG A 703
04	AC4	SOFTWARE	TYR A:61 , LEU A:77 , PHE A:81 , ASP A:84 , PHE A:147 , ARG A:169 , VAL A:173 , LEU A:178 , ASN A:213 , SER A:217 , LYS A:220 , GLU A:221 , ASN A:299 , TRP A:302 , ARG A:308 , TYR A:309 , MG A:701 , MG A:702 , MG A:703 , HOH A:862 , HOH A:993 , HOH A:994 , HOH A:995 , HOH A:996 , HOH A:1109	BINDING SITE FOR RESIDUE FPS A 704
05	AC5	SOFTWARE	ASP B:84 , MG B:403 , FPS B:405 , HOH B:793 , HOH B:794 , HOH B:795 , HOH B:799	BINDING SITE FOR RESIDUE MG B 401
06	AC6	SOFTWARE	ARG B:107 , GLU B:142 , ARG B:149 , ARG C:197 , GLU C:200 , LEU C:280 , HOH C:803 , HOH C:984	BINDING SITE FOR RESIDUE GOL B 402
07	AC7	SOFTWARE	ASP B:84 , MG B:401 , FPS B:405 , HOH B:789 , HOH B:799 , HOH B:832	BINDING SITE FOR RESIDUE MG B 403
08	AC8	SOFTWARE	ASN B:213 , SER B:217 , GLU B:221 , FPS B:405 , HOH B:791	BINDING SITE FOR RESIDUE MG B 404
09	AC9	SOFTWARE	TYR B:61 , LEU B:77 , PHE B:81 , ASP B:84 , PHE B:147 , ARG B:169 , VAL B:173 , LEU B:178 , ASN B:213 , SER B:217 , LYS B:220 , GLU B:221 , ASN B:299 , TRP B:302 , ARG B:308 , TYR B:309 , MG B:401 , MG B:403 , MG B:404 , HOH B:789 , HOH B:793 , HOH B:799 , HOH B:832	BINDING SITE FOR RESIDUE FPS B 405
10	BC1	SOFTWARE	ASP C:84 , MG C:702 , FPS C:705 , HOH C:933 , HOH C:934 , HOH C:935 , HOH C:936	BINDING SITE FOR RESIDUE MG C 701
11	BC2	SOFTWARE	ASP C:84 , MG C:701 , FPS C:705 , HOH C:930 , HOH C:931 , HOH C:933	BINDING SITE FOR RESIDUE MG C 702
12	BC3	SOFTWARE	ASN C:213 , SER C:217 , GLU C:221 , FPS C:705 , HOH C:938	BINDING SITE FOR RESIDUE MG C 703
13	BC4	SOFTWARE	ARG B:197 , LEU B:275 , ARG C:107 , GLU C:142 , ARG C:149	BINDING SITE FOR RESIDUE GOL C 704
14	BC5	SOFTWARE	TYR C:61 , PHE C:81 , ASP C:84 , PHE C:147 , ARG C:169 , VAL C:173 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ASN C:299 , TRP C:302 , ARG C:308 , TYR C:309 , MG C:701 , MG C:702 , MG C:703 , HOH C:827 , HOH C:930 , HOH C:931 , HOH C:933 , HOH C:936	BINDING SITE FOR RESIDUE FPS C 705
15	BC6	SOFTWARE	ASN D:213 , SER D:217 , GLU D:221 , FPS D:704 , HOH D:860	BINDING SITE FOR RESIDUE MG D 701
16	BC7	SOFTWARE	ASP D:84 , MG D:703 , FPS D:704 , HOH D:856 , HOH D:857 , HOH D:858	BINDING SITE FOR RESIDUE MG D 702
17	BC8	SOFTWARE	ASP D:84 , MG D:702 , FPS D:704 , HOH D:858 , HOH D:861 , HOH D:910 , HOH D:914	BINDING SITE FOR RESIDUE MG D 703
18	BC9	SOFTWARE	TYR D:61 , PHE D:81 , ASP D:84 , PHE D:147 , ARG D:169 , VAL D:173 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:701 , MG D:702 , MG D:703 , HOH D:856 , HOH D:857 , HOH D:858 , HOH D:906 , HOH D:914	BINDING SITE FOR RESIDUE FPS D 704

(no "SS Bond" information available for 4KUX)

(no "Cis Peptide Bond" information available for 4KUX)

(no "SAP(SNP)/Variant" information available for 4KUX)

(no "PROSITE Motif" information available for 4KUX)

(no "Exon" information available for 4KUX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kuxa_ A: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kux A   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307

Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kuxb_ B: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kux B   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307

Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kuxc_ C: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kux C   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307

Chain D from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kuxd_ D: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kux D   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Terpenoid synthases (196)

Superfamily: Terpenoid synthases (196)

Family: Aristolochene/pentalenene synthase (16)

Protein domain: automated matches (11)

Aspergillus terreus [TaxId: 33178] (11)

1a	d4kuxa_	A:
1b	d4kuxc_	C:
1c	d4kuxd_	D:
1d	d4kuxb_	B:

(no "CATH Domain" information available for 4KUX)

(no "Pfam Domain" information available for 4KUX)

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3bny	CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH 2F-FPP
4kvd	CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLIN- 1-IUM
4kvi	CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8- OCTAHYDROQUINOLIN-1-IUM

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Ligands, Modified Residues, Ions (3, 18)

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