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(-) Description

Title :  CRYSTAL STRUCTURE OF N299A ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH (1S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL) DECAHYDROQUINOLIZIN-5-IUM
 
Authors :  M. Chen, D. W. Christianson
Date :  06 Mar 16  (Deposition) - 25 May 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),B (1x)
Biol. Unit 2:  C (1x),D (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Lyase, Terpene Cyclases, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Chen, W. K. Chou, N. Al-Lami, J. A. Faraldos, R. K. Allemann, D. E. Cane, D. W. Christianson
Probing The Role Of Active Site Water In The Sesquiterpene Cyclization Reaction Catalyzed By Aristolochene Synthase.
Biochemistry V. 55 2864 2016
PubMed-ID: 27172425  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00343

(-) Compounds

Molecule 1 - ARISTOLOCHENE SYNTHASE
    ChainsA, B, C, D
    EC Number4.2.3.9
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneARI1
    MutationYES
    Organism ScientificASPERGILLUS TERREUS
    Organism Taxid33178
    SynonymAS,SESQUITERPENE CYCLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A (1x)B (1x)  
Biological Unit 2 (1x)  C (1x)D (1x)
Biological Unit 3 (1x)A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric Unit (4, 23)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2JF14Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG12Ligand/IonMAGNESIUM ION
4POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2JF11Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG-1Ligand/IonMAGNESIUM ION
4POP1Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2JF11Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG-1Ligand/IonMAGNESIUM ION
4POP1Ligand/IonPYROPHOSPHATE 2-
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2JF12Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG-1Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:81 , ASP A:84 , ARG A:169 , ASN A:213 , SER A:217 , LYS A:220 , GLU A:221 , ARG A:308 , TYR A:309 , MG A:402 , MG A:403 , MG A:404 , JF1 A:405 , HOH A:534 , HOH A:554 , HOH A:557 , HOH A:582 , HOH A:607 , HOH A:618 , HOH A:634binding site for residue POP A 401
02AC2SOFTWAREASP A:84 , POP A:401 , MG A:403 , HOH A:554 , HOH A:607 , HOH A:634 , HOH A:701binding site for residue MG A 402
03AC3SOFTWAREASP A:84 , POP A:401 , MG A:402 , HOH A:534 , HOH A:557 , HOH A:634binding site for residue MG A 403
04AC4SOFTWAREASN A:213 , SER A:217 , GLU A:221 , POP A:401 , HOH A:582binding site for residue MG A 404
05AC5SOFTWARETYR A:61 , PHE A:81 , PHE A:147 , VAL A:173 , LEU A:178 , LEU A:209 , POP A:401binding site for residue JF1 A 405
06AC6SOFTWAREARG A:107 , GLU A:142 , ARG A:149 , HOH A:562 , HOH A:671 , ARG C:197 , GLU C:200binding site for residue GOL A 406
07AC7SOFTWAREPHE B:81 , ASP B:84 , ARG B:169 , ASN B:213 , SER B:217 , LYS B:220 , GLU B:221 , ARG B:308 , TYR B:309 , MG B:402 , MG B:403 , MG B:404 , JF1 B:405 , HOH B:522 , HOH B:542 , HOH B:594 , HOH B:643 , HOH B:658binding site for residue POP B 401
08AC8SOFTWAREASP B:84 , POP B:401 , MG B:403 , HOH B:542 , HOH B:554 , HOH B:643 , HOH B:670binding site for residue MG B 402
09AC9SOFTWAREASP B:84 , POP B:401 , MG B:402 , HOH B:522 , HOH B:548 , HOH B:643binding site for residue MG B 403
10AD1SOFTWAREASN B:213 , SER B:217 , GLU B:221 , POP B:401 , HOH B:594binding site for residue MG B 404
11AD2SOFTWARETYR B:61 , PHE B:81 , PHE B:147 , VAL B:173 , LEU B:178 , LEU B:209 , POP B:401binding site for residue JF1 B 405
12AD3SOFTWAREPHE C:81 , ASP C:84 , ARG C:169 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ARG C:308 , TYR C:309 , MG C:402 , MG C:403 , MG C:404 , JF1 C:405 , HOH C:504 , HOH C:533 , HOH C:560 , HOH C:568 , HOH C:606binding site for residue POP C 401
13AD4SOFTWAREASP C:84 , POP C:401 , MG C:403 , HOH C:526 , HOH C:568 , HOH C:606 , HOH C:625binding site for residue MG C 402
14AD5SOFTWAREASP C:84 , POP C:401 , MG C:402 , HOH C:504 , HOH C:560 , HOH C:606binding site for residue MG C 403
15AD6SOFTWAREASN C:213 , SER C:217 , GLU C:221 , POP C:401 , HOH C:520binding site for residue MG C 404
16AD7SOFTWARETYR C:61 , PHE C:81 , VAL C:173 , LEU C:178 , POP C:401binding site for residue JF1 C 405
17AD8SOFTWAREARG A:197 , LEU A:275 , GLU A:278 , LEU A:280 , HOH A:637 , ARG C:107 , GLU C:142 , ARG C:149binding site for residue GOL C 406
18AD9SOFTWARESER B:13 , HIS C:37 , ARG C:114 , TYR C:120binding site for residue GOL C 407
19AE1SOFTWAREPHE D:81 , ASP D:84 , ARG D:169 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:402 , MG D:403 , MG D:404 , JF1 D:405 , HOH D:1015 , HOH D:1020 , HOH D:1037 , HOH D:1043 , HOH D:1068binding site for residue POP D 401
20AE2SOFTWAREASP D:84 , POP D:401 , MG D:403 , HOH D:1009 , HOH D:1037 , HOH D:1068 , HOH D:1082binding site for residue MG D 402
21AE3SOFTWAREASP D:84 , POP D:401 , MG D:402 , HOH D:1020 , HOH D:1043 , HOH D:1068binding site for residue MG D 403
22AE4SOFTWAREASN D:213 , SER D:217 , GLU D:221 , POP D:401 , HOH D:1018binding site for residue MG D 404
23AE5SOFTWARETYR D:61 , PHE D:81 , PHE D:147 , VAL D:173 , LEU D:178 , LEU D:209 , ASN D:213 , POP D:401binding site for residue JF1 D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IMP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IMP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IMP)

(-) Exons   (0, 0)

(no "Exon" information available for 5IMP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5imp A   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGAELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    

Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5imp B   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGAELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    

Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5imp C   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGAELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    

Chain D from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5imp D   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGAELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IMP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IMP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IMP)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARIS_ASPTE | Q9UR082e4o 2oa6 3bnx 3bny 3cke 4kux 4kvd 4kvi 4kvw 4kvy 4kwd 5imi 5imn 5in8 5ivg

(-) Related Entries Specified in the PDB File

5imi 5imn 5in8