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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH (1S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL) DECAHYDROQUINOLIZIN-5-IUM
 
Authors :  M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Ca R. K. Allemann, D. W. Christianson
Date :  23 May 13  (Deposition) - 14 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Class I Terpenoid Cyclase, Alpha-Helical Fold, Farnesyl Diphosphate, Metal-Binding, Magnesium, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Cane, R. K. Allemann, D. W. Christianson
Mechanistic Insights From The Binding Of Substrate And Carbocation Intermediate Analogues To Aristolochene Synthase.
Biochemistry V. 52 5441 2013
PubMed-ID: 23905850  |  Reference-DOI: 10.1021/BI400691V

(-) Compounds

Molecule 1 - ARISTOLOCHENE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 14-320
    Gene: ARI1
    Organism Scientific: ASPERGILLUS TERREUS
    Organism Taxid: 33178
    Synonym: AS, SESQUITERPENE CYCLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2JF14Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG12Ligand/IonMAGNESIUM ION
4POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2JF12Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG-1Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2JF12Ligand/Ion(1S,5S,8S,9AR)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3MG-1Ligand/IonMAGNESIUM ION
4POP2Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:84 , ARG A:169 , ASN A:213 , SER A:217 , LYS A:220 , GLU A:221 , ARG A:308 , TYR A:309 , MG A:402 , MG A:403 , MG A:404 , JF1 A:405 , HOH A:802 , HOH A:803 , HOH A:804 , HOH A:805 , HOH A:807 , HOH A:808 , HOH A:809BINDING SITE FOR RESIDUE POP A 401
02AC2SOFTWAREASP A:84 , POP A:401 , MG A:403 , HOH A:805 , HOH A:806 , HOH A:807 , HOH A:808BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREASP A:84 , POP A:401 , MG A:402 , HOH A:803 , HOH A:804 , HOH A:805BINDING SITE FOR RESIDUE MG A 403
04AC4SOFTWAREASN A:213 , SER A:217 , GLU A:221 , POP A:401 , HOH A:802BINDING SITE FOR RESIDUE MG A 404
05AC5SOFTWAREVAL A:57 , TYR A:61 , PHE A:81 , PHE A:147 , VAL A:173 , ASN A:299 , POP A:401BINDING SITE FOR RESIDUE JF1 A 405
06AC6SOFTWAREPHE B:81 , ASP B:84 , ARG B:169 , ASN B:213 , SER B:217 , LYS B:220 , GLU B:221 , ARG B:308 , TYR B:309 , MG B:402 , MG B:403 , MG B:404 , JF1 B:405 , HOH B:822 , HOH B:823 , HOH B:824 , HOH B:826 , HOH B:827 , HOH B:829BINDING SITE FOR RESIDUE POP B 401
07AC7SOFTWAREARG B:169 , ASN B:213 , SER B:217 , GLU B:221 , POP B:401 , HOH B:825BINDING SITE FOR RESIDUE MG B 402
08AC8SOFTWAREASP B:84 , POP B:401 , MG B:404 , HOH B:822 , HOH B:823 , HOH B:824BINDING SITE FOR RESIDUE MG B 403
09AC9SOFTWAREASP B:84 , POP B:401 , MG B:403 , HOH B:823 , HOH B:827 , HOH B:828 , HOH B:829BINDING SITE FOR RESIDUE MG B 404
10BC1SOFTWAREVAL B:57 , TYR B:61 , PHE B:147 , VAL B:173 , ASN B:299 , POP B:401BINDING SITE FOR RESIDUE JF1 B 405
11BC2SOFTWAREARG B:107 , GLU B:142 , ARG B:149 , ARG C:197 , GLU C:200 , HOH C:550 , HOH C:551 , HOH C:707BINDING SITE FOR RESIDUE GOL B 406
12BC3SOFTWAREPHE C:81 , ASP C:84 , ARG C:169 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ARG C:308 , TYR C:309 , MG C:402 , MG C:403 , MG C:404 , JF1 C:405 , HOH C:718 , HOH C:720 , HOH C:721 , HOH C:722 , HOH C:723 , HOH C:724 , HOH C:725BINDING SITE FOR RESIDUE POP C 401
13BC4SOFTWAREASP C:84 , POP C:401 , MG C:403 , HOH C:723 , HOH C:724 , HOH C:725BINDING SITE FOR RESIDUE MG C 402
14BC5SOFTWAREASP C:84 , POP C:401 , MG C:402 , HOH C:718 , HOH C:719 , HOH C:720 , HOH C:724BINDING SITE FOR RESIDUE MG C 403
15BC6SOFTWAREASN C:213 , SER C:217 , GLU C:221 , POP C:401 , HOH C:722BINDING SITE FOR RESIDUE MG C 404
16BC7SOFTWAREVAL C:57 , TYR C:61 , PHE C:81 , ASP C:84 , PHE C:147 , VAL C:173 , ASN C:299 , POP C:401BINDING SITE FOR RESIDUE JF1 C 405
17BC8SOFTWAREPHE D:81 , ASP D:84 , ARG D:169 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:402 , MG D:403 , MG D:404 , JF1 D:405 , HOH D:658 , HOH D:659 , HOH D:660 , HOH D:661 , HOH D:662 , HOH D:663 , HOH D:665BINDING SITE FOR RESIDUE POP D 401
18BC9SOFTWAREASP D:84 , POP D:401 , MG D:403 , HOH D:659 , HOH D:662 , HOH D:663 , HOH D:664BINDING SITE FOR RESIDUE MG D 402
19CC1SOFTWAREASP D:84 , POP D:401 , MG D:402 , HOH D:658 , HOH D:659 , HOH D:665BINDING SITE FOR RESIDUE MG D 403
20CC2SOFTWAREASN D:213 , SER D:217 , GLU D:221 , POP D:401 , HOH D:661BINDING SITE FOR RESIDUE MG D 404
21CC3SOFTWAREVAL D:57 , TYR D:61 , ASP D:84 , PHE D:147 , VAL D:173 , LEU D:178 , ASN D:299 , POP D:401BINDING SITE FOR RESIDUE JF1 D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KVY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KVY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KVY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KVY)

(-) Exons   (0, 0)

(no "Exon" information available for 4KVY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvya_ A: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvy A   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvyb_ B: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvy B   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvyc_ C: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvy C   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain D from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvyd_ D: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvy D   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KVY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KVY)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARIS_ASPTE | Q9UR08: 2e4o 2oa6 3bnx 3bny 3cke 4kux 4kvd 4kvi 4kvw 4kwd 5imi 5imn 5imp 5in8 5ivg

(-) Related Entries Specified in the PDB File

3bny CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH 2F-FPP
4kux CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH FSPP
4kvd CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLIN- 1-IUM
4kvi CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8- OCTAHYDROQUINOLIN-1-IUM
4kvw CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (3R,6R,9AR)-6,9A-DIMETHYL-3-(PROP-1-EN-2-YL) DECAHYDROQUINOLIZIN-5-IUM
4kwd CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (1R,8R,9AS)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL) DECAHYDROQUINOLIZIN-5-IUM