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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7, 8-OCTAHYDROQUINOLIN-1-IUM
 
Authors :  M. Chen, J. A. Faraldos, N. Al-Lami, M. Janvier, E. L. D'Antonio, D. E. Ca R. K. Allemann, D. W. Christianson
Date :  22 May 13  (Deposition) - 14 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Class I Terpene Cyclase, Alpha-Helical Fold, Farnesyl Diphosphate, Metal-Binding, Magnesium, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Cane, R. K. Allemann, D. W. Christianson
Mechanistic Insights From The Binding Of Substrate And Carbocation Intermediate Analogues To Aristolochene Synthase.
Biochemistry V. 52 5441 2013
PubMed-ID: 23905850  |  Reference-DOI: 10.1021/BI400691V

(-) Compounds

Molecule 1 - ARISTOLOCHENE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 14-320
    Gene: ARI1
    Organism Scientific: ASPERGILLUS TERREUS
    Organism Taxid: 33178
    Synonym: AS, SESQUITERPENE CYCLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
11SV4Ligand/Ion(4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8-OCTAHYDROQUINOLINIUM
2MG12Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
11SV2Ligand/Ion(4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8-OCTAHYDROQUINOLINIUM
2MG-1Ligand/IonMAGNESIUM ION
3POP2Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
11SV2Ligand/Ion(4AS,7S)-4A-METHYL-7-(PROP-1-EN-2-YL)-2,3,4,4A,5,6,7,8-OCTAHYDROQUINOLINIUM
2MG-1Ligand/IonMAGNESIUM ION
3POP2Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:84 , MG A:702 , POP A:704 , HOH A:1026 , HOH A:1027 , HOH A:1028 , HOH A:1031BINDING SITE FOR RESIDUE MG A 701
02AC2SOFTWAREASP A:84 , MG A:701 , POP A:704 , HOH A:1028 , HOH A:1029 , HOH A:1030BINDING SITE FOR RESIDUE MG A 702
03AC3SOFTWAREASN A:213 , SER A:217 , GLU A:221 , POP A:704 , HOH A:1024BINDING SITE FOR RESIDUE MG A 703
04AC4SOFTWAREPHE A:81 , ASP A:84 , ARG A:169 , ASN A:213 , SER A:217 , LYS A:220 , GLU A:221 , ARG A:308 , TYR A:309 , MG A:701 , MG A:702 , MG A:703 , 1SV A:705 , HOH A:1025 , HOH A:1026 , HOH A:1027 , HOH A:1028 , HOH A:1029 , HOH A:1030BINDING SITE FOR RESIDUE POP A 704
05AC5SOFTWARETYR A:61 , LEU A:80 , PHE A:81 , PHE A:147 , VAL A:173 , LEU A:178 , ASN A:213 , POP A:704BINDING SITE FOR RESIDUE 1SV A 705
06AC6SOFTWAREASP B:84 , MG B:702 , POP B:704 , HOH B:1033 , HOH B:1034 , HOH B:1101BINDING SITE FOR RESIDUE MG B 701
07AC7SOFTWAREASP B:84 , MG B:701 , POP B:704 , HOH B:1033 , HOH B:1035 , HOH B:1036 , HOH B:1037BINDING SITE FOR RESIDUE MG B 702
08AC8SOFTWAREASN B:213 , SER B:217 , GLU B:221 , POP B:704 , HOH B:1032BINDING SITE FOR RESIDUE MG B 703
09AC9SOFTWAREPHE B:81 , ASP B:84 , ARG B:169 , ASN B:213 , SER B:217 , LYS B:220 , GLU B:221 , ARG B:308 , TYR B:309 , MG B:701 , MG B:702 , MG B:703 , 1SV B:705 , HOH B:1031 , HOH B:1032 , HOH B:1033 , HOH B:1037 , HOH B:1101BINDING SITE FOR RESIDUE POP B 704
10BC1SOFTWARETYR B:61 , LEU B:80 , PHE B:81 , VAL B:173 , LEU B:178 , ASN B:213 , POP B:704BINDING SITE FOR RESIDUE 1SV B 705
11BC2SOFTWAREPHE C:81 , ASP C:84 , ARG C:169 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ARG C:308 , TYR C:309 , MG C:402 , MG C:403 , MG C:404 , 1SV C:405 , HOH C:611 , HOH C:623 , HOH C:624 , HOH C:625 , HOH C:627BINDING SITE FOR RESIDUE POP C 401
12BC3SOFTWAREASP C:84 , POP C:401 , MG C:403 , HOH C:623 , HOH C:627 , HOH C:628 , HOH C:629BINDING SITE FOR RESIDUE MG C 402
13BC4SOFTWAREASP C:84 , POP C:401 , MG C:402 , HOH C:624 , HOH C:625 , HOH C:627BINDING SITE FOR RESIDUE MG C 403
14BC5SOFTWAREASN C:213 , SER C:217 , GLU C:221 , POP C:401 , HOH C:626BINDING SITE FOR RESIDUE MG C 404
15BC6SOFTWARETYR C:61 , LEU C:80 , PHE C:81 , VAL C:173 , LEU C:178 , ASN C:213 , POP C:401BINDING SITE FOR RESIDUE 1SV C 405
16BC7SOFTWAREPHE D:81 , ASP D:84 , ARG D:169 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:402 , MG D:403 , MG D:404 , 1SV D:405 , HOH D:586 , HOH D:588 , HOH D:589 , HOH D:590 , HOH D:591BINDING SITE FOR RESIDUE POP D 401
17BC8SOFTWAREASP D:84 , POP D:401 , MG D:403 , HOH D:581 , HOH D:585 , HOH D:586 , HOH D:590BINDING SITE FOR RESIDUE MG D 402
18BC9SOFTWAREASP D:84 , POP D:401 , MG D:402 , HOH D:589 , HOH D:590 , HOH D:591BINDING SITE FOR RESIDUE MG D 403
19CC1SOFTWAREASN D:213 , SER D:217 , GLU D:221 , POP D:401 , HOH D:580BINDING SITE FOR RESIDUE MG D 404
20CC2SOFTWARETYR D:61 , LEU D:80 , PHE D:81 , ASP D:84 , PHE D:147 , VAL D:173 , LEU D:178 , ASN D:213 , ASN D:299 , POP D:401BINDING SITE FOR RESIDUE 1SV D 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KVI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KVI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KVI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KVI)

(-) Exons   (0, 0)

(no "Exon" information available for 4KVI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvia_ A: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvi A   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvib_ B: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvi B   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvic_ C: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvi C   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    


Chain D from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kvid_ D: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvi D   8 LEPPPSTFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPGLAAYVEGLEYQMSGNELWSQTTLRYSV 311
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KVI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KVI)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARIS_ASPTE | Q9UR08: 2e4o 2oa6 3bnx 3bny 3cke 4kux 4kvd 4kvw 4kvy 4kwd 5imi 5imn 5imp 5in8 5ivg

(-) Related Entries Specified in the PDB File

3bny CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH 2F-FPP
4kux CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH FSPP
4kvd CRYSTAL STRUCTURE OF ARISTOLOCHENE SYNTHASE COMPLEXED WITH (4AS,7S)-1,4A-DIMETHYL-7-(PROP-1-EN-2-YL)DECAHYDROQUINOLIN- 1-IUM