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4K4I
Biol. Unit 2
Info
Asym.Unit (270 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (70 KB)
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Title
:
TERNARY CRYSTAL STRUCTURES OF A HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)FTC-TP.
Authors
:
R. Vyas, Z. Suo
Date
:
12 Apr 13 (Deposition) - 16 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Dna Polymerase, Dna Repair, Phosphoryl Transfer Reaction, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
R. Vyas, W. J. Zahurancik, Z. Suo
Structural Basis For The Binding And Incorporation Of Nucleotide Analogs With L-Stereochemistry By Human Dna Polymerase Lambda.
Proc. Natl. Acad. Sci. Usa V. 111 E3033 2014
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: [[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-... (1RYa)
1b: [[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-... (1RYb)
1c: [[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-... (1RYc)
1d: [[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-... (1RYd)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
4a: CACODYLATE ION (CACa)
4b: CACODYLATE ION (CACb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
4d: CALCIUM ION (CAd)
4e: CALCIUM ION (CAe)
4f: CALCIUM ION (CAf)
4g: CALCIUM ION (CAg)
4h: CALCIUM ION (CAh)
4i: CALCIUM ION (CAi)
4j: CALCIUM ION (CAj)
4k: CALCIUM ION (CAk)
4l: CALCIUM ION (CAl)
4m: CALCIUM ION (CAm)
4n: CALCIUM ION (CAn)
4o: CALCIUM ION (CAo)
4p: CALCIUM ION (CAp)
4q: CALCIUM ION (CAq)
4r: CALCIUM ION (CAr)
4s: CALCIUM ION (CAs)
4t: CALCIUM ION (CAt)
4u: CALCIUM ION (CAu)
4v: CALCIUM ION (CAv)
4w: CALCIUM ION (CAw)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1RY
1
Ligand/Ion
[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2
ACT
2
Ligand/Ion
ACETATE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CAC
1
Ligand/Ion
CACODYLATE ION
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Sites
(10, 10)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
ARG E:386 , GLY E:416 , SER E:417 , ARG E:420 , CYS E:425 , GLY E:426 , ASP E:427 , ASP E:429 , TYR E:505 , PHE E:506 , ASN E:513 , CA E:602 , CA E:603 , HOH E:733 , HOH E:752 , HOH E:753 , HOH E:754 , HOH E:761 , HOH E:778 , DG F:5 , DC G:6
BINDING SITE FOR RESIDUE 1RY E 601
02
BC3
SOFTWARE
ASP E:427 , ASP E:429 , 1RY E:601 , HOH E:752
BINDING SITE FOR RESIDUE CA E 602
03
BC4
SOFTWARE
ASP E:427 , ASP E:429 , ASP E:490 , 1RY E:601
BINDING SITE FOR RESIDUE CA E 603
04
BC5
SOFTWARE
HOH E:754 , HOH E:778
BINDING SITE FOR RESIDUE CA E 604
05
BC6
SOFTWARE
SER E:339 , ILE E:341 , ALA E:344 , HOH E:726 , DA G:5 , HOH G:101
BINDING SITE FOR RESIDUE CA E 605
06
BC7
SOFTWARE
GLU E:396 , GLN E:400 , CYS E:412 , HOH E:771
BINDING SITE FOR RESIDUE CA E 606
07
BC8
SOFTWARE
SER E:463 , GLU E:465 , HOH E:763 , HOH F:209 , ARG I:441
BINDING SITE FOR RESIDUE CAC E 607
08
BC9
SOFTWARE
THR E:555 , GLU E:556 , HOH E:777
BINDING SITE FOR RESIDUE ACT E 608
09
CC1
SOFTWARE
HOH F:203 , HOH F:205 , HOH F:206 , HOH F:207
BINDING SITE FOR RESIDUE CA F 101
10
CC2
SOFTWARE
DG F:2 , DG F:3
BINDING SITE FOR RESIDUE ACT F 102
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
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SCOP Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (270 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (68 KB)
Header - Biol.Unit 3
Biol.Unit 4 (70 KB)
Header - Biol.Unit 4
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