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4K4H
Biol. Unit 4
Info
Asym.Unit (268 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (69 KB)
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(1)
Title
:
TERNARY CRYSTAL STRUCTURES OF A HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP.
Authors
:
R. Vyas, Z. Suo
Date
:
12 Apr 13 (Deposition) - 16 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Dna Polymerase, Dna Repair, Phosphoryl Transfer Reaction, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Vyas, W. J. Zahurancik, Z. Suo
Structural Basis For The Binding And Incorporation Of Nucleotide Analogs With L-Stereochemistry By Human Dna Polymerase Lambda.
Proc. Natl. Acad. Sci. Usa V. 111 E3033 2014
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: [[(2R,5S)-5-(4-AZANYL-2-OXIDANYLID... (1RZa)
1b: [[(2R,5S)-5-(4-AZANYL-2-OXIDANYLID... (1RZb)
1c: [[(2R,5S)-5-(4-AZANYL-2-OXIDANYLID... (1RZc)
1d: [[(2R,5S)-5-(4-AZANYL-2-OXIDANYLID... (1RZd)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
3k: CALCIUM ION (CAk)
3l: CALCIUM ION (CAl)
3m: CALCIUM ION (CAm)
3n: CALCIUM ION (CAn)
3o: CALCIUM ION (CAo)
3p: CALCIUM ION (CAp)
3q: CALCIUM ION (CAq)
3r: CALCIUM ION (CAr)
3s: CALCIUM ION (CAs)
3t: CALCIUM ION (CAt)
3u: CALCIUM ION (CAu)
3v: CALCIUM ION (CAv)
3w: CALCIUM ION (CAw)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1RZ
1
Ligand/Ion
[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2
ACT
2
Ligand/Ion
ACETATE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC7 (SOFTWARE)
02: CC6 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
CYS A:300 , ILE A:302 , ILE A:305 , HOH A:701 , HOH A:732 , DC D:3 , LYS M:307
BINDING SITE FOR RESIDUE CA A 607
02
CC6
SOFTWARE
ARG M:386 , SER M:417 , ARG M:420 , GLY M:426 , TYR M:505 , SER M:509 , ALA M:510 , ASN M:513 , ARG M:517 , CA M:603 , HOH M:746 , HOH M:747 , HOH M:836 , DG N:5 , DC O:6
BINDING SITE FOR RESIDUE 1RZ M 601
03
CC7
SOFTWARE
ASP M:427 , ASP M:429 , CA M:603 , HOH M:732 , HOH M:786 , HOH M:841
BINDING SITE FOR RESIDUE CA M 602
04
CC8
SOFTWARE
ASP M:427 , ASP M:429 , 1RZ M:601 , CA M:602 , HOH M:747
BINDING SITE FOR RESIDUE CA M 603
05
CC9
SOFTWARE
SER M:339 , ILE M:341 , ALA M:344 , DA O:5 , HOH O:103
BINDING SITE FOR RESIDUE CA M 604
06
DC1
SOFTWARE
CYS M:300 , ILE M:302 , ILE M:305 , DC P:3
BINDING SITE FOR RESIDUE CA M 605
07
DC2
SOFTWARE
GLU M:318 , HOH M:759 , HOH M:769 , HOH M:838 , HOH M:839 , HOH M:840
BINDING SITE FOR RESIDUE CA M 606
08
DC3
SOFTWARE
ASP M:326
BINDING SITE FOR RESIDUE ACT M 607
09
DC4
SOFTWARE
PRO A:482 , PHE M:499 , PRO M:554 , THR M:555 , GLU M:556 , HOH M:829
BINDING SITE FOR RESIDUE ACT M 608
10
DC5
SOFTWARE
DC N:4 , DG N:6 , HOH N:205
BINDING SITE FOR RESIDUE CA N 101
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (69 KB)
Header - Biol.Unit 3
Biol.Unit 4 (69 KB)
Header - Biol.Unit 4
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