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Sequence, Chains, Asymmetric and Biological Units

Title TERNARY CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE LAMBDA IN WITH DNA AND L-DCTP.
Keywords DNA POLYMERASE, DNA REPAIR, PHOSPHORYL TRANSFER REACTION,, TRANSFERASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4K4G     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE LAMBDA  A 322 2548 0
2  Other macromolecule   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  B 11 225 0
3  Other macromolecule   DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')  C 6 119 0
4  Other macromolecule   DNA (5'-D(P*GP*CP*CP*G)-3')  D 4 83 0
5  Protein   DNA POLYMERASE LAMBDA  E 323 2541 0
6  Other macromolecule   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  F 11 225 0
7  Other macromolecule   DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')  G 6 119 0
8  Other macromolecule   DNA (5'-D(P*GP*CP*CP*G)-3')  H 4 83 0
9  Protein   DNA POLYMERASE LAMBDA  I 327 2580 0
10  Other macromolecule   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  J 11 225 0
11  Other macromolecule   DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')  K 6 119 0
12  Other macromolecule   DNA (5'-D(P*GP*CP*CP*G)-3')  L 4 83 0
13  Protein   DNA POLYMERASE LAMBDA  M 328 2584 0
14  Other macromolecule   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  N 11 225 0
15  Other macromolecule   DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')  O 6 119 0
16  Other macromolecule   DNA (5'-D(P*GP*CP*CP*G)-3')  P 4 83 0
17  Ligand   DNA POLYMERASE LAMBDA  A 6 0 33
18  Ligand   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  B 2 0 5
19  Ligand   DNA POLYMERASE LAMBDA  E 6 0 33
20  Ligand   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  F 1 0 1
21  Ligand   DNA POLYMERASE LAMBDA  I 1 0 28
22  Ligand   DNA POLYMERASE LAMBDA  M 1 0 4
23  Ligand   DNA POLYMERASE LAMBDA  I 4 0 7
24  Ligand   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  J 2 0 2
25  Ligand   DNA (5'-D(P*GP*CP*CP*G)-3')  L 1 0 1
26  Ligand   DNA POLYMERASE LAMBDA  M 2 0 29
27  Ligand   DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')  F 1 0 4
28  Ligand   DNA POLYMERASE LAMBDA  M 4 0 8
29 Water     422 0 422
total       1837 11961 577
Proteins
Unit 1 THR250 ASN251 HIS252 ASN253 LEU254 HIS255 ILE256 THR257 GLU258 LYS259 LEU260 GLU261 VAL262 LEU263 ALA264 LYS265 ALA266 TYR267 SER268 VAL269 GLN270 GLY271 ASP272 LYS273 TRP274 ARG275 ALA276 LEU277 GLY278 TYR279 ALA280 LYS281 ALA282 ILE283 ASN284 ALA285 LEU286 LYS287 SER288 PHE289 HIS290 LYS291 PRO292 VAL293 THR294 SER295 TYR296 GLN297 GLU298 ALA299 CYS300 SER301 ILE302 PRO303 GLY304 ILE305 GLY306 LYS307 ARG308 MET309 ALA310 GLU311 LYS312 ILE313 ILE314 GLU315 ILE316 LEU317 GLU318 SER319 GLY320 HIS321 LEU322 ARG323 LYS324 LEU325 ASP326 HIS327 ILE328 SER329 GLU330 SER331 VAL332 PRO333 VAL334 LEU335 GLU336 LEU337 PHE338 SER339 ASN340 ILE341 TRP342 GLY343 ALA344 GLY345 THR346 LYS347 THR348 ALA349 GLN350 MET351 TRP352 TYR353 GLN354 GLN355 GLY356 PHE357 ARG358 SER359 LEU360 GLU361 ASP362 ILE363 ARG364 SER365 GLN366 ALA367 SER368 LEU369 THR370 THR371 GLN372 GLN373 ALA374 ILE375 GLY376 LEU377 LYS378 HIS379 TYR380 SER381 ASP382 PHE383 LEU384 GLU385 ARG386 MET387 PRO388 ARG389 GLU390 GLU391 ALA392 THR393 GLU394 ILE395 GLU396 GLN397 THR398 VAL399 GLN400 LYS401 ALA402 ALA403 GLN404 ALA405 PHE406 ASN407 SER408 GLY409 LEU410 LEU411 CYS412 VAL413 ALA414 CYS415 GLY416 SER417 TYR418 ARG419 ARG420 GLY421 LYS422 ALA423 THR424 CYS425 GLY426 ASP427 VAL428 ASP429 VAL430 LEU431 ILE432 THR433 HIS434 PRO435 ASP436 GLY437 ARG438 SER439 HIS440 ARG441 GLY442 ILE443 PHE444 SER445 ARG446 LEU447 LEU448 ASP449 SER450 LEU451 ARG452 GLN453 GLU454 GLY455 PHE456 LEU457 THR458 ASP459 ASP460 LEU461 VAL462 SER463 GLN464 GLU465 GLU466 ASN467 GLY468 GLN469 GLN470 GLN471 LYS472 TYR473 LEU474 GLY475 VAL476 CYS477 ARG478 LEU479 PRO480 GLY481 PRO482 GLY483 ARG484 ARG485 HIS486 ARG487 ARG488 LEU489 ASP490 ILE491 ILE492 VAL493 VAL494 PRO495 TYR496 SER497 GLU498 PHE499 ALA500 CYS501 ALA502 LEU503 LEU504 TYR505 PHE506 THR507 GLY508 SER509 ALA510 HIS511 PHE512 ASN513 ARG514 SER515 MET516 ARG517 ALA518 LEU519 ALA520 LYS521 THR522 LYS523 GLY524 MET525 SER526 LEU527 SER528 GLU529 HIS530 ALA531 LEU532 SER533 THR534 ALA535 VAL536 VAL537 PRO547 GLY548 ARG549 VAL550 LEU551 PRO552 THR553 PRO554 THR555 GLU556 LYS557 ASP558 VAL559 PHE560 ARG561 LEU562 LEU563 GLY564 LEU565 PRO566 TYR567 ARG568 GLU569 PRO570 ALA571 GLU572 ARG573 ASP574 TRP575 LEU576 GLU577 HIS578 HIS579 HIS580
Unit 5 ALA249 THR250 ASN251 HIS252 ASN253 LEU254 HIS255 ILE256 THR257 GLU258 LYS259 LEU260 GLU261 VAL262 LEU263 ALA264 LYS265 ALA266 TYR267 SER268 VAL269 GLN270 GLY271 ASP272 LYS273 TRP274 ARG275 ALA276 LEU277 GLY278 TYR279 ALA280 LYS281 ALA282 ILE283 ASN284 ALA285 LEU286 LYS287 SER288 PHE289 HIS290 LYS291 PRO292 VAL293 THR294 SER295 TYR296 GLN297 GLU298 ALA299 CYS300 SER301 ILE302 PRO303 GLY304 ILE305 GLY306 LYS307 ARG308 MET309 ALA310 GLU311 LYS312 ILE313 ILE314 GLU315 ILE316 LEU317 GLU318 SER319 GLY320 HIS321 LEU322 ARG323 LYS324 LEU325 ASP326 HIS327 ILE328 SER329 GLU330 SER331 VAL332 PRO333 VAL334 LEU335 GLU336 LEU337 PHE338 SER339 ASN340 ILE341 TRP342 GLY343 ALA344 GLY345 THR346 LYS347 THR348 ALA349 GLN350 MET351 TRP352 TYR353 GLN354 GLN355 GLY356 PHE357 ARG358 SER359 LEU360 GLU361 ASP362 ILE363 ARG364 SER365 GLN366 ALA367 SER368 LEU369 THR370 THR371 GLN372 GLN373 ALA374 ILE375 GLY376 LEU377 LYS378 HIS379 TYR380 SER381 ASP382 PHE383 LEU384 GLU385 ARG386 MET387 PRO388 ARG389 GLU390 GLU391 ALA392 THR393 GLU394 ILE395 GLU396 GLN397 THR398 VAL399 GLN400 LYS401 ALA402 ALA403 GLN404 ALA405 PHE406 ASN407 SER408 GLY409 LEU410 LEU411 CYS412 VAL413 ALA414 CYS415 GLY416 SER417 TYR418 ARG419 ARG420 GLY421 LYS422 ALA423 THR424 CYS425 GLY426 ASP427 VAL428 ASP429 VAL430 LEU431 ILE432 THR433 HIS434 PRO435 ASP436 GLY437 ARG438 SER439 HIS440 ARG441 GLY442 ILE443 PHE444 SER445 ARG446 LEU447 LEU448 ASP449 SER450 LEU451 ARG452 GLN453 GLU454 GLY455 PHE456 LEU457 THR458 ASP459 ASP460 LEU461 VAL462 SER463 GLN464 GLN470 GLN471 LYS472 TYR473 LEU474 GLY475 VAL476 CYS477 ARG478 LEU479 PRO480 GLY481 PRO482 GLY483 ARG484 ARG485 HIS486 ARG487 ARG488 LEU489 ASP490 ILE491 ILE492 VAL493 VAL494 PRO495 TYR496 SER497 GLU498 PHE499 ALA500 CYS501 ALA502 LEU503 LEU504 TYR505 PHE506 THR507 GLY508 SER509 ALA510 HIS511 PHE512 ASN513 ARG514 SER515 MET516 ARG517 ALA518 LEU519 ALA520 LYS521 THR522 LYS523 GLY524 MET525 SER526 LEU527 SER528 GLU529 HIS530 ALA531 LEU532 SER533 THR534 ALA535 VAL536 VAL537 ARG538 ASN539 THR540 HIS541 GLY542 CYS543 LYS544 VAL545 GLY546 PRO547 GLY548 ARG549 VAL550 LEU551 PRO552 THR553 PRO554 THR555 GLU556 LYS557 ASP558 VAL559 PHE560 ARG561 LEU562 LEU563 GLY564 LEU565 PRO566 TYR567 ARG568 GLU569 PRO570 ALA571 GLU572 ARG573 ASP574 TRP575 LEU576
Unit 9 THR250 ASN251 HIS252 ASN253 LEU254 HIS255 ILE256 THR257 GLU258 LYS259 LEU260 GLU261 VAL262 LEU263 ALA264 LYS265 ALA266 TYR267 SER268 VAL269 GLN270 GLY271 ASP272 LYS273 TRP274 ARG275 ALA276 LEU277 GLY278 TYR279 ALA280 LYS281 ALA282 ILE283 ASN284 ALA285 LEU286 LYS287 SER288 PHE289 HIS290 LYS291 PRO292 VAL293 THR294 SER295 TYR296 GLN297 GLU298 ALA299 CYS300 SER301 ILE302 PRO303 GLY304 ILE305 GLY306 LYS307 ARG308 MET309 ALA310 GLU311 LYS312 ILE313 ILE314 GLU315 ILE316 LEU317 GLU318 SER319 GLY320 HIS321 LEU322 ARG323 LYS324 LEU325 ASP326 HIS327 ILE328 SER329 GLU330 SER331 VAL332 PRO333 VAL334 LEU335 GLU336 LEU337 PHE338 SER339 ASN340 ILE341 TRP342 GLY343 ALA344 GLY345 THR346 LYS347 THR348 ALA349 GLN350 MET351 TRP352 TYR353 GLN354 GLN355 GLY356 PHE357 ARG358 SER359 LEU360 GLU361 ASP362 ILE363 ARG364 SER365 GLN366 ALA367 SER368 LEU369 THR370 THR371 GLN372 GLN373 ALA374 ILE375 GLY376 LEU377 LYS378 HIS379 TYR380 SER381 ASP382 PHE383 LEU384 GLU385 ARG386 MET387 PRO388 ARG389 GLU390 GLU391 ALA392 THR393 GLU394 ILE395 GLU396 GLN397 THR398 VAL399 GLN400 LYS401 ALA402 ALA403 GLN404 ALA405 PHE406 ASN407 SER408 GLY409 LEU410 LEU411 CYS412 VAL413 ALA414 CYS415 GLY416 SER417 TYR418 ARG419 ARG420 GLY421 LYS422 ALA423 THR424 CYS425 GLY426 ASP427 VAL428 ASP429 VAL430 LEU431 ILE432 THR433 HIS434 PRO435 ASP436 GLY437 ARG438 SER439 HIS440 ARG441 GLY442 ILE443 PHE444 SER445 ARG446 LEU447 LEU448 ASP449 SER450 LEU451 ARG452 GLN453 GLU454 GLY455 PHE456 LEU457 THR458 ASP459 ASP460 LEU461 VAL462 SER463 GLN464 GLU465 GLU466 ASN467 GLY468 GLN469 GLN470 GLN471 LYS472 TYR473 LEU474 GLY475 VAL476 CYS477 ARG478 LEU479 PRO480 GLY481 PRO482 GLY483 ARG484 ARG485 HIS486 ARG487 ARG488 LEU489 ASP490 ILE491 ILE492 VAL493 VAL494 PRO495 TYR496 SER497 GLU498 PHE499 ALA500 CYS501 ALA502 LEU503 LEU504 TYR505 PHE506 THR507 GLY508 SER509 ALA510 HIS511 PHE512 ASN513 ARG514 SER515 MET516 ARG517 ALA518 LEU519 ALA520 LYS521 THR522 LYS523 GLY524 MET525 SER526 LEU527 SER528 GLU529 HIS530 ALA531 LEU532 SER533 THR534 ALA535 VAL536 VAL537 CYS543 LYS544 VAL545 GLY546 PRO547 GLY548 ARG549 VAL550 LEU551 PRO552 THR553 PRO554 THR555 GLU556 LYS557 ASP558 VAL559 PHE560 ARG561 LEU562 LEU563 GLY564 LEU565 PRO566 TYR567 ARG568 GLU569 PRO570 ALA571 GLU572 ARG573 ASP574 TRP575 LEU576 GLU577 HIS578 HIS579 HIS580 HIS581
Unit 13 ALA249 THR250 ASN251 HIS252 ASN253 LEU254 HIS255 ILE256 THR257 GLU258 LYS259 LEU260 GLU261 VAL262 LEU263 ALA264 LYS265 ALA266 TYR267 SER268 VAL269 GLN270 GLY271 ASP272 LYS273 TRP274 ARG275 ALA276 LEU277 GLY278 TYR279 ALA280 LYS281 ALA282 ILE283 ASN284 ALA285 LEU286 LYS287 SER288 PHE289 HIS290 LYS291 PRO292 VAL293 THR294 SER295 TYR296 GLN297 GLU298 ALA299 CYS300 SER301 ILE302 PRO303 GLY304 ILE305 GLY306 LYS307 ARG308 MET309 ALA310 GLU311 LYS312 ILE313 ILE314 GLU315 ILE316 LEU317 GLU318 SER319 GLY320 HIS321 LEU322 ARG323 LYS324 LEU325 ASP326 HIS327 ILE328 SER329 GLU330 SER331 VAL332 PRO333 VAL334 LEU335 GLU336 LEU337 PHE338 SER339 ASN340 ILE341 TRP342 GLY343 ALA344 GLY345 THR346 LYS347 THR348 ALA349 GLN350 MET351 TRP352 TYR353 GLN354 GLN355 GLY356 PHE357 ARG358 SER359 LEU360 GLU361 ASP362 ILE363 ARG364 SER365 GLN366 ALA367 SER368 LEU369 THR370 THR371 GLN372 GLN373 ALA374 ILE375 GLY376 LEU377 LYS378 HIS379 TYR380 SER381 ASP382 PHE383 LEU384 GLU385 ARG386 MET387 PRO388 ARG389 GLU390 GLU391 ALA392 THR393 GLU394 ILE395 GLU396 GLN397 THR398 VAL399 GLN400 LYS401 ALA402 ALA403 GLN404 ALA405 PHE406 ASN407 SER408 GLY409 LEU410 LEU411 CYS412 VAL413 ALA414 CYS415 GLY416 SER417 TYR418 ARG419 ARG420 GLY421 LYS422 ALA423 THR424 CYS425 GLY426 ASP427 VAL428 ASP429 VAL430 LEU431 ILE432 THR433 HIS434 PRO435 ASP436 GLY437 ARG438 SER439 HIS440 ARG441 GLY442 ILE443 PHE444 SER445 ARG446 LEU447 LEU448 ASP449 SER450 LEU451 ARG452 GLN453 GLU454 GLY455 PHE456 LEU457 THR458 ASP459 ASP460 LEU461 VAL462 SER463 GLN464 GLU465 GLU466 ASN467 GLY468 GLN469 GLN470 GLN471 LYS472 TYR473 LEU474 GLY475 VAL476 CYS477 ARG478 LEU479 PRO480 GLY481 PRO482 GLY483 ARG484 ARG485 HIS486 ARG487 ARG488 LEU489 ASP490 ILE491 ILE492 VAL493 VAL494 PRO495 TYR496 SER497 GLU498 PHE499 ALA500 CYS501 ALA502 LEU503 LEU504 TYR505 PHE506 THR507 GLY508 SER509 ALA510 HIS511 PHE512 ASN513 ARG514 SER515 MET516 ARG517 ALA518 LEU519 ALA520 LYS521 THR522 LYS523 GLY524 MET525 SER526 LEU527 SER528 GLU529 HIS530 ALA531 LEU532 SER533 THR534 ALA535 VAL536 VAL537 ARG538 HIS541 GLY542 CYS543 LYS544 VAL545 GLY546 PRO547 GLY548 ARG549 VAL550 LEU551 PRO552 THR553 PRO554 THR555 GLU556 LYS557 ASP558 VAL559 PHE560 ARG561 LEU562 LEU563 GLY564 LEU565 PRO566 TYR567 ARG568 GLU569 PRO570 ALA571 GLU572 ARG573 ASP574 TRP575 LEU576 GLU577 HIS578
Other macromolecules
Unit 2 DC1 DG2 DG3 DC4 DG5 DG6 DT7 DA8 DC9 DT10 DG11
Unit 3 DC1 DA2 DG3 DT4 DA5 DC6
Unit 4 DG1 DC2 DC3 DG4
Unit 6 DC1 DG2 DG3 DC4 DG5 DG6 DT7 DA8 DC9 DT10 DG11
Unit 7 DC1 DA2 DG3 DT4 DA5 DC6
Unit 8 DG1 DC2 DC3 DG4
Unit 10 DC1 DG2 DG3 DC4 DG5 DG6 DT7 DA8 DC9 DT10 DG11
Unit 11 DC1 DA2 DG3 DT4 DA5 DC6
Unit 12 DG1 DC2 DC3 DG4
Unit 14 DC1 DG2 DG3 DC4 DG5 DG6 DT7 DA8 DC9 DT10 DG11
Unit 15 DC1 DA2 DG3 DT4 DA5 DC6
Unit 16 DG1 DC2 DC3 DG4
Ligands
Unit 17 1S0601 CA602 CA603 CA604 CA605 CA606
Unit 18 CA101 ACT102
Unit 19 1S0601 CA602 CA603 CA604 CA605 CA606
Unit 20 CA101
Unit 21 1S0601
Unit 22 ACT601
Unit 23 CA602 CA603 CA604 ACT605
Unit 24 CA101 CA102
Unit 25 CA101
Unit 26 1S0602 CA603
Unit 27 ACT102
Unit 28 CA604 CA605 CA606 CAC607
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany