PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4JT3
Biol. Unit 1
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (179 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF TTK KINASE DOMAIN WITH AN INHIBITOR: 400740
Authors
:
W. Qiu, M. Harris-Brandts, M. Feher, D. E. Awrey, N. Y. Chirgadze
Date
:
22 Mar 13 (Deposition) - 26 Mar 14 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: A (4x)
Keywords
:
Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Qiu, M. Harris-Brandts, M. Feher, D. E. Awrey, N. Y. Chirgadze
Crystal Structure Of Ttk Kinase Domain With An Inhibitor: 400740
To Be Published
[
close entry info
]
Hetero Components
(3, 15)
Info
All Hetero Components
1a: 2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-... (1PHa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PH
1
Ligand/Ion
2-PHENYL-N-[3-(3-SULFAMOYLPHENYL)-2H-INDAZOL-5-YL]ACETAMIDE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:595 , HIS A:636 , HIS A:639 , ILE A:782 , PRO A:783 , HOH A:905
BINDING SITE FOR RESIDUE PO4 A 801
02
AC2
SOFTWARE
LYS A:616 , LYS A:617 , TYR A:726 , GLY A:730
BINDING SITE FOR RESIDUE PO4 A 802
03
AC3
SOFTWARE
TYR A:554 , TYR A:597 , TYR A:599 , PO4 A:804
BINDING SITE FOR RESIDUE PO4 A 803
04
AC4
SOFTWARE
ILE A:518 , PHE A:540 , TYR A:554 , TYR A:599 , PO4 A:803
BINDING SITE FOR RESIDUE PO4 A 804
05
AC5
SOFTWARE
LYS A:529 , SER A:533 , GLY A:534 , VAL A:539 , GLN A:541 , ALA A:551 , LYS A:553 , MET A:602 , GLU A:603 , CYS A:604 , GLY A:605 , ASN A:606 , LEU A:654 , ILE A:663 , EDO A:808
BINDING SITE FOR RESIDUE 1PH A 805
06
AC6
SOFTWARE
ARG A:523 , TYR A:525 , TYR A:550
BINDING SITE FOR RESIDUE EDO A 806
07
AC7
SOFTWARE
ASN A:562 , ARG A:569 , GLU A:633 , HIS A:636
BINDING SITE FOR RESIDUE EDO A 807
08
AC8
SOFTWARE
LEU A:575 , MET A:600 , MET A:602 , ILE A:663 , 1PH A:805 , EDO A:810
BINDING SITE FOR RESIDUE EDO A 808
09
AC9
SOFTWARE
TYR A:591 , ASP A:766 , HIS A:788 , HOH A:904
BINDING SITE FOR RESIDUE EDO A 809
10
BC1
SOFTWARE
LYS A:553 , TYR A:568 , EDO A:808
BINDING SITE FOR RESIDUE EDO A 810
11
BC2
SOFTWARE
LYS A:629 , GLU A:633 , EDO A:815
BINDING SITE FOR RESIDUE EDO A 811
12
BC3
SOFTWARE
SER A:526 , LEU A:543 , CYS A:604 , ASN A:606 , VAL A:656 , ASP A:657
BINDING SITE FOR RESIDUE EDO A 812
13
BC4
SOFTWARE
ASP A:590
BINDING SITE FOR RESIDUE EDO A 813
14
BC5
SOFTWARE
LYS A:538 , TYR A:554 , ASN A:556
BINDING SITE FOR RESIDUE EDO A 814
15
BC6
SOFTWARE
VAL A:791 , GLN A:792 , EDO A:811
BINDING SITE FOR RESIDUE EDO A 815
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4jt3a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4jt3a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (51 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Biol.Unit 3 (179 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4JT3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help