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(-) Description

Title :  CRYSTAL STRUCTURE OF LEPB GAP CORE IN A TRANSITION STATE MIMETIC COMPLEX WITH RAB1A AND ALF3
 
Authors :  A. K. Mishra, C. M. Delcampo, R. E. Collins, C. R. Roy, D. G. Lambright
Date :  15 Jan 13  (Deposition) - 10 Jul 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Arginine Finger, Glutamate Finger, P-Loop Motif, Nucleotide Binding, Intrinsic Gtpase Activity, Gtp Hydrolysis, Gtp Hydrolysis Activator, Gtpase Activating Protein (Gap), Protein Transport, Hydrolase- Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Mishra, C. M. Del Campo, R. E. Collins, C. R. Roy, D. G. Lambright
The Legionella Pneumophila Gtpase Activating Protein Lepb Accelerates Rab1 Deactivation By A Non-Canonical Hydrolytic Mechanism.
J. Biol. Chem. V. 288 24000 2013
PubMed-ID: 23821544  |  Reference-DOI: 10.1074/JBC.M113.470625

(-) Compounds

Molecule 1 - LEPB
    Chains: A, C, E
    EC Number: 3.6.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B (MODIFIED)
    Expression System Strain: BL21(DE3)-RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LEPB GAP DOMAIN, CATALYTIC CORE
    Gene: LEPB, LPG2490
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1 / ATCC 33152 / DSM 7513
 
Molecule 2 - RAS-RELATED PROTEIN RAB-1A
    Chains: B, D, F
    EC Number: 3.6.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B (MODIFIED)
    Expression System Strain: BL21(DE3)-RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RAB1, RAB1A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: YPT1-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 53)

Asymmetric Unit (7, 53)
No.NameCountTypeFull Name
1ACT12Ligand/IonACETATE ION
2AF33Ligand/IonALUMINUM FLUORIDE
3GDP3Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GOL8Ligand/IonGLYCEROL
5K6Ligand/IonPOTASSIUM ION
6MG3Ligand/IonMAGNESIUM ION
7MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (5, 19)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2AF31Ligand/IonALUMINUM FLUORIDE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GOL7Ligand/IonGLYCEROL
5K-1Ligand/IonPOTASSIUM ION
6MG-1Ligand/IonMAGNESIUM ION
7MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (5, 17)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2AF31Ligand/IonALUMINUM FLUORIDE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GOL1Ligand/IonGLYCEROL
5K-1Ligand/IonPOTASSIUM ION
6MG-1Ligand/IonMAGNESIUM ION
7MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (3, 8)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2AF31Ligand/IonALUMINUM FLUORIDE
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4GOL-1Ligand/IonGLYCEROL
5K-1Ligand/IonPOTASSIUM ION
6MG-1Ligand/IonMAGNESIUM ION
7MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (33, 33)

Asymmetric Unit (33, 33)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:599 , LYS A:606BINDING SITE FOR RESIDUE ACT A 901
02AC2SOFTWARELEU A:367 , LEU A:368 , K A:910BINDING SITE FOR RESIDUE ACT A 902
03AC3SOFTWARETHR A:330 , LEU A:332 , PRO C:328 , LEU C:329 , THR C:330BINDING SITE FOR RESIDUE GOL A 903
04AC4SOFTWAREARG A:395 , PRO A:400 , TYR A:539 , PRO A:540BINDING SITE FOR RESIDUE GOL A 904
05AC5SOFTWARELEU A:562 , ASN A:563 , SER A:564BINDING SITE FOR RESIDUE GOL A 905
06AC6SOFTWAREHIS A:415 , ASP B:92BINDING SITE FOR RESIDUE GOL A 906
07AC7SOFTWAREHIS A:417 , SER A:443 , ARG A:444 , ARG A:596 , THR A:597 , ASP A:598 , HOH A:1006BINDING SITE FOR RESIDUE GOL A 907
08AC8SOFTWARESER A:564 , PRO A:565 , LYS A:566 , PRO A:567 , SER A:568BINDING SITE FOR RESIDUE GOL A 908
09AC9SOFTWAREGLU A:536 , ASN A:563BINDING SITE FOR RESIDUE K A 909
10BC1SOFTWAREASN A:363 , ACT A:902BINDING SITE FOR RESIDUE K A 910
11BC2SOFTWARESER A:564 , PRO A:565 , GLU A:609BINDING SITE FOR RESIDUE K A 911
12BC3SOFTWARETHR A:384BINDING SITE FOR RESIDUE K A 912
13BC4SOFTWARESER B:25 , THR B:43 , GDP B:202 , AF3 B:203 , HOH B:302 , HOH B:303BINDING SITE FOR RESIDUE MG B 201
14BC5SOFTWAREARG A:444 , GLY B:21 , VAL B:22 , GLY B:23 , LYS B:24 , SER B:25 , CYS B:26 , TYR B:36 , SER B:39 , TYR B:40 , ILE B:41 , ASN B:124 , LYS B:125 , ASP B:127 , LEU B:128 , SER B:154 , ALA B:155 , LYS B:156 , MG B:201 , AF3 B:203 , HOH B:302 , HOH B:303BINDING SITE FOR RESIDUE GDP B 202
15BC6SOFTWAREARG A:444 , ASP B:19 , SER B:20 , LYS B:24 , SER B:42 , THR B:43 , GLY B:69 , GLN B:70 , MG B:201 , GDP B:202 , HOH B:302 , HOH B:303 , HOH B:308BINDING SITE FOR RESIDUE AF3 B 203
16BC7SOFTWARESER B:79 , ARG B:82 , GOL B:206BINDING SITE FOR RESIDUE ACT B 204
17BC8SOFTWAREASP B:19 , ARG B:74 , GLN B:104BINDING SITE FOR RESIDUE ACT B 205
18BC9SOFTWARELYS B:13 , GLN B:63 , TRP B:65 , TYR B:80 , ARG B:82 , ACT B:204BINDING SITE FOR RESIDUE GOL B 206
19CC1SOFTWAREHIS C:415 , ASP D:92BINDING SITE FOR RESIDUE ACT C 701
20CC2SOFTWAREASP C:599 , LYS C:606 , ACT C:706BINDING SITE FOR RESIDUE ACT C 702
21CC3SOFTWAREHIS C:417 , SER C:443 , ARG C:444 , ARG C:596 , THR C:597 , ASP C:598BINDING SITE FOR RESIDUE ACT C 703
22CC4SOFTWAREASN C:389 , PRO C:524 , PHE C:526 , ALA C:527 , GLU C:528BINDING SITE FOR RESIDUE ACT C 704
23CC5SOFTWAREASN C:532 , GLU C:534 , SER C:535 , TYR C:539 , PRO C:540 , ILE C:541BINDING SITE FOR RESIDUE ACT C 705
24CC6SOFTWARELEU C:562 , SER C:564 , ACT C:702BINDING SITE FOR RESIDUE ACT C 706
25CC7SOFTWAREGLU C:536BINDING SITE FOR RESIDUE K C 708
26CC8SOFTWARESER D:25 , THR D:43 , GDP D:202 , AF3 D:203 , HOH D:302 , HOH D:303BINDING SITE FOR RESIDUE MG D 201
27CC9SOFTWAREHIS C:415 , ARG C:444 , SER D:20 , GLY D:21 , VAL D:22 , GLY D:23 , LYS D:24 , SER D:25 , CYS D:26 , TYR D:36 , SER D:39 , TYR D:40 , ILE D:41 , ASN D:124 , LYS D:125 , ASP D:127 , LEU D:128 , SER D:154 , ALA D:155 , LYS D:156 , MG D:201 , AF3 D:203 , ACT D:205 , HOH D:302 , HOH D:303BINDING SITE FOR RESIDUE GDP D 202
28DC1SOFTWAREARG C:444 , SER D:20 , GLY D:21 , LYS D:24 , SER D:42 , THR D:43 , GLY D:69 , GLN D:70 , MG D:201 , GDP D:202 , HOH D:301 , HOH D:302 , HOH D:303BINDING SITE FOR RESIDUE AF3 D 203
29DC2SOFTWAREASP D:19 , GLU D:71 , ARG D:74 , GLN D:104BINDING SITE FOR RESIDUE ACT D 204
30DC3SOFTWAREGLU D:38 , LEU D:128 , LYS D:156 , GDP D:202BINDING SITE FOR RESIDUE ACT D 205
31DC4SOFTWARELYS F:24 , SER F:25 , ASP F:66 , GDP F:201 , AF3 F:202BINDING SITE FOR RESIDUE MG F 200
32DC5SOFTWAREARG E:444 , ASP F:19 , GLY F:21 , VAL F:22 , GLY F:23 , LYS F:24 , SER F:25 , CYS F:26 , TYR F:36 , GLU F:38 , TYR F:40 , ILE F:41 , ASN F:124 , LYS F:125 , LEU F:128 , SER F:154 , ALA F:155 , LYS F:156 , MG F:200 , AF3 F:202BINDING SITE FOR RESIDUE GDP F 201
33DC6SOFTWAREASP F:19 , SER F:20 , GLY F:21 , LYS F:24 , THR F:43 , THR F:67 , GLN F:70 , MG F:200 , GDP F:201BINDING SITE FOR RESIDUE AF3 F 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IRU)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp B:56 -Gly B:57
2Asp D:56 -Gly D:57
3Asp F:56 -Gly F:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IRU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IRU)

(-) Exons   (0, 0)

(no "Exon" information available for 4IRU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee........hhhhhhhhhhhhhhhh....eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru A 325 SLKPLTLLmTSSTSFSETINQWADILKTTDmEKFSFDSNPINLLELVKQFNLYVDELAITCEANNVWAKERIDSTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCKEHKDSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPLPNKESEFFYPIDEKALAKmNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISGKK 620
                                   334       344       354|      364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544    |  554       564       574       584       594       604       614      
                                  333-MSE               355-MSE                                                                                                                                                                                           549-MSE                                                                   


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhh.......eeee..........hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru B   7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFmTmAAEIKKRm 176
                                    16        26        36        46        56  |     66        76        86        96       106       116       126       136       146       156       166 |     176
                                                                              59A                                                                                                        166-MSE   176-MSE
                                                                                                                                                                                           168-MSE    


Chain C from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee........hhhhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru C 325 SLKPLTLLmTSSTSFSETINQWADILKTTDmEKFSFDSNPINLLELVKQFNLYVDELAITCEANNVWAKERIDSTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCKEHKDSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPLPNKESEFFYPIDEKALAKmNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISGKK 620
                                   334       344       354|      364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544    |  554       564       574       584       594       604       614      
                                  333-MSE               355-MSE                                                                                                                                                                                           549-MSE                                                                   


Chain D from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru D   7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFmTmAAEIKKRm 176
                                    16        26        36        46        56  |     66        76        86        96       106       116       126       136       146       156       166 |     176
                                                                              59A                                                                                                        166-MSE   176-MSE
                                                                                                                                                                                           168-MSE    


Chain E from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee........hhhhhhhhhhhhhhh......ee.....hhhhhhhhhhhhhh......................hhhhh.....hhhhh......hhhhhhhhhh........ee....hhhhhhh.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhh.....hhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru E 325 SLKPLTLLmTSSTSFSETINQWADILKTTDmEKFSFDSNPINLLELVKQFNLYVDELAITCEANNVWAKERIDTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCKEHKDSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPLPNKESEFFYPIDEKALAKmNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISGKK 620
                                   334       344       354|      364       374       384       394  ||   405       415       425       435       445       455       465       475       485       495       505       515       525       535       545   |   555       565       575       585       595       605       615     
                                  333-MSE               355-MSE                                   397|                                                                                                                                                   549-MSE                                                                   
                                                                                                   399                                                                                                                                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhh.......ee.......eee.......eeeeeee.......hhhhhh.......eeeeee..hhhhhh..................eeeeee...............hhhhhh....ee....................hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iru F   7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFmTmAAEIKKRm 176
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166 |     176
                                                                                                                                                                                         166-MSE   176-MSE
                                                                                                                                                                                           168-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IRU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IRU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IRU)

(-) Gene Ontology  (38, 39)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp B:56 - Gly B:57   [ RasMol ]  
    Asp D:56 - Gly D:57   [ RasMol ]  
    Asp F:56 - Gly F:57   [ RasMol ]  
 
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  RAB1A_HUMAN | P62820
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAB1A_HUMAN | P62820: 2fol 2wwx 3l0i 3sfv 3tkl 4fmb 4fmc 4fmd 4fme 4jvs
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        Q5ZSM7_LEGPH | Q5ZSM7: 4i1m 4i1o

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4IRU)