4I1O - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA GAP DOMAIN OF LEPB IN COMPLEX WITH RAB1B BOUND TO GDP AND BEF3

Authors :   E. M. Gazdag, A. Streller, I. R. Vetter, R. S. Goody, A. Itzen

Date :   21 Nov 12 (Deposition) - 16 Jan 13 (Release) - 20 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Gap, Rabgap, Hydrolase Activator, Rab1B, Lpg2490, Gtpase-Activating Proteins, Hydrolysis, Rab1 Hydrolase, Gtp Hydrolase, Protein Transport-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Mihai Gazdag, A. Streller, I. Haneburger, H. Hilbi, I. R. Vetter, R. S. Goody, A. Itzen
Mechanism Of Rab1B Deactivation By The Legionella Pneumophila Gap Lepb.
Embo Rep. V. 14 199 2013
PubMed-ID: 23288104 | Reference-DOI: 10.1038/EMBOR.2012.211

Molecule 1 - RAS-RELATED PROTEIN RAB-1B
	Chains	:	A, C, E, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAL
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 3-174
	Gene	:	RAB1B
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - LEPB
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPINM
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	GAP DOMAIN (UNP RESIDUES 317-618)
	Gene	:	LEPB, LPG2490
	Mutation	:	YES
	Organism Scientific	:	LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA
	Organism Taxid	:	272624
	Strain	:	PHILADELPHIA 1 / ATCC 33152 / DSM 7513

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 18)

No.	Name	Count	Type	Full Name
1	BEF	4	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MG	4	Ligand/Ion	MAGNESIUM ION
4	PEG	6	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:22 , THR A:40 , ASP A:63 , GDP A:202 , BEF A:203 , HOH A:306	BINDING SITE FOR RESIDUE MG A 201
02	AC2	SOFTWARE	GLY A:18 , VAL A:19 , GLY A:20 , LYS A:21 , SER A:22 , CYS A:23 , TYR A:33 , ILE A:38 , ASN A:121 , LYS A:122 , ASP A:124 , LEU A:125 , SER A:151 , ALA A:152 , LYS A:153 , MG A:201 , BEF A:203 , PEG A:204 , HOH A:303 , HOH A:306 , HOH A:309 , ARG D:444	BINDING SITE FOR RESIDUE GDP A 202
03	AC3	SOFTWARE	SER A:17 , GLY A:18 , LYS A:21 , SER A:39 , THR A:40 , GLY A:66 , MG A:201 , GDP A:202 , ARG D:444	BINDING SITE FOR RESIDUE BEF A 203
04	AC4	SOFTWARE	TYR A:33 , GLU A:35 , LYS A:153 , GDP A:202	BINDING SITE FOR RESIDUE PEG A 204
05	AC5	SOFTWARE	SER C:22 , THR C:40 , GDP C:202 , BEF C:203 , HOH C:304	BINDING SITE FOR RESIDUE MG C 201
06	AC6	SOFTWARE	ARG B:444 , GLY C:18 , VAL C:19 , GLY C:20 , LYS C:21 , SER C:22 , CYS C:23 , TYR C:33 , TYR C:37 , ASN C:121 , LYS C:122 , ASP C:124 , LEU C:125 , SER C:151 , ALA C:152 , LYS C:153 , MG C:201 , BEF C:203 , PEG C:204 , HOH C:304 , HOH C:308 , HOH C:312	BINDING SITE FOR RESIDUE GDP C 202
07	AC7	SOFTWARE	ARG B:444 , SER C:17 , GLY C:18 , LYS C:21 , SER C:39 , THR C:40 , MG C:201 , GDP C:202	BINDING SITE FOR RESIDUE BEF C 203
08	AC8	SOFTWARE	TYR C:33 , GLU C:35 , TYR C:37 , GDP C:202	BINDING SITE FOR RESIDUE PEG C 204
09	AC9	SOFTWARE	ASN B:441 , LYS B:482 , THR C:40 , ASP C:44	BINDING SITE FOR RESIDUE PEG C 205
10	BC1	SOFTWARE	LYS C:10 , SER C:76 , TYR C:77 , TYR C:78 , ARG C:79 , GLY C:80	BINDING SITE FOR RESIDUE PEG C 206
11	BC2	SOFTWARE	LEU D:562 , LYS D:606	BINDING SITE FOR RESIDUE PEG D 701
12	BC3	SOFTWARE	SER E:22 , THR E:40 , GDP E:202 , BEF E:203 , HOH E:306	BINDING SITE FOR RESIDUE MG E 201
13	BC4	SOFTWARE	GLY E:18 , VAL E:19 , GLY E:20 , LYS E:21 , SER E:22 , CYS E:23 , TYR E:33 , ILE E:38 , ASN E:121 , LYS E:122 , ASP E:124 , LEU E:125 , SER E:151 , ALA E:152 , LYS E:153 , MG E:201 , BEF E:203 , HOH E:306 , ARG F:444 , HOH F:721	BINDING SITE FOR RESIDUE GDP E 202
14	BC5	SOFTWARE	SER E:17 , GLY E:18 , SER E:22 , SER E:39 , THR E:40 , ALA E:65 , GLY E:66 , MG E:201 , GDP E:202 , HOH E:306 , ARG F:444	BINDING SITE FOR RESIDUE BEF E 203
15	BC6	SOFTWARE	SER G:22 , THR G:40 , GDP G:202 , BEF G:203 , HOH G:307	BINDING SITE FOR RESIDUE MG G 201
16	BC7	SOFTWARE	GLY G:18 , GLY G:20 , LYS G:21 , SER G:22 , CYS G:23 , TYR G:33 , TYR G:37 , THR G:40 , ASN G:121 , LYS G:122 , ASP G:124 , LEU G:125 , SER G:151 , ALA G:152 , LYS G:153 , MG G:201 , BEF G:203 , PEG G:204 , HOH G:307 , HOH G:313 , ARG H:444	BINDING SITE FOR RESIDUE GDP G 202
17	BC8	SOFTWARE	SER G:17 , GLY G:18 , LYS G:21 , SER G:39 , THR G:40 , GLY G:66 , MG G:201 , GDP G:202 , ARG H:444	BINDING SITE FOR RESIDUE BEF G 203
18	BC9	SOFTWARE	GLU G:35 , LEU G:125 , LYS G:153 , GDP G:202	BINDING SITE FOR RESIDUE PEG G 204

(no "SS Bond" information available for 4I1O)

(no "Cis Peptide Bond" information available for 4I1O)

(no "SAP(SNP)/Variant" information available for 4I1O)

(no "PROSITE Motif" information available for 4I1O)

(no "Exon" information available for 4I1O)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4i1oa_ A: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o A   4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVLFQ 180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.........hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o B 328 PLTLLMTSSTSFSETINQWADILKTMEKFDSNPINLLELVKQFNLYVDELAITCEANNVWASTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCAAHADSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPNKESEFFYPIDEKALAKMNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISG 618
                                   337       347    || 361       371       381       391||     406       416       426       436       446       456       466       476       486       496       506       516       526 ||    538       548       558       568       578       588       598       608       618
                                                  352| ||                             392|                                                                                                                               528|                                                                                       
                                                   355 ||                              398                                                                                                                                531                                                                                       
                                                     357|                                                                                                                                                                                                                                                           
                                                      360

Chain C from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4i1oc_ C: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o C   4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVLFQ 180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain D from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhh........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o D 327 KPLTLLMTSSTSFSETINQWADILKTMEKFDSNPINLLELVKQFNLYVDELAITCEANNVWASTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCAAHADSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPNKESEFFYPIDEKALAKMNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISG 618
                                   336       346     ||360       370       380       390 ||    405       415       425       435       445       455       465       475       485       495       505       515       525  ||   537       547       557       567       577       587       597       607       617 
                                                   352| ||                             392|                                                                                                                               528|                                                                                       
                                                    355 ||                              398                                                                                                                                531                                                                                       
                                                      357|                                                                                                                                                                                                                                                           
                                                       360

Chain E from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4i1oe_ E: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o E   4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVLFQ 180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain F from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o F 327 KPLTLLMTSSTSFSETINQWADILKTMEKFDSNPINLLELVKQFNLYVDELAITCEANNVWASTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCAAHADSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPNKESEFFYPIDEKALAKMNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISG 618
                                   336       346     ||360       370       380       390 ||    405       415       425       435       445       455       465       475       485       495       505       515       525  ||   537       547       557       567       577       587       597       607       617 
                                                   352| ||                             392|                                                                                                                               528|                                                                                       
                                                    355 ||                              398                                                                                                                                531                                                                                       
                                                      357|                                                                                                                                                                                                                                                           
                                                       360

Chain G from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4i1og_ G: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhh......ee...eeeeeeeeee..eeeeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhh....eee.......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o G   4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVLFQ 180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain H from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.........hhhhh.....ee..ee.....hhhhhhhhhhh.......ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhh........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i1o H 327 KPLTLLMTSSTSFSETINQWADILKTMEKFDSNPINLLELVKQFNLYVDELAITCEANNVWASTPNLFALYDNSGGEAIHGHAFVPYYKESIVLRRLFTVDPNTFNLSRFAAFEGPCQLYCAAHADSAWVKIQTLLTLGNGIINTLKIIKQAQAFGIDEAVTENLKALKEQFIAFQLAEADIKESLKAPSFAEPNKESEFFYPIDEKALAKMNGYQLATICLEELNSPKPSPLIERILSNKKFWKRINSAFESGVFKGRTDDPAGKIAKIREWHQLLQISG 618
                                   336       346     ||360       370       380       390 ||    405       415       425       435       445       455       465       475       485       495       505       515       525  ||   537       547       557       567       577       587       597       607       617 
                                                   352| ||                             392|                                                                                                                               528|                                                                                       
                                                    355 ||                              398                                                                                                                                531                                                                                       
                                                      357|                                                                                                                                                                                                                                                           
                                                       360

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: G proteins (693)

Protein domain: automated matches (173)

Human (Homo sapiens) [TaxId: 9606] (112)

1a	d4i1oa_	A:
1b	d4i1oc_	C:
1c	d4i1oe_	E:
1d	d4i1og_	G:

(no "CATH Domain" information available for 4I1O)

(no "Pfam Domain" information available for 4I1O)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
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Access by PDB/NDB ID
	4i1o
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	RAB1B_HUMAN \| Q9H0U4
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	Q5ZSM7_LEGPH \| Q5ZSM7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RAB1B_HUMAN \| Q9H0U4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	RAB1B_HUMAN \| Q9H0U4	:	3jza 3nkv 4hlq 5szh 5szk
UniProtKB/TrEMBL
	Q5ZSM7_LEGPH \| Q5ZSM7	:	4i1m 4iru

4i1m	CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA GAP DOMAIN OF LEPB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (26, 27)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File