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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF LEPB GAP CORE IN A TRANSITION STATE MIM COMPLEX WITH RAB1A AND ALF3
Keywords ARGININE FINGER, GLUTAMATE FINGER, P-LOOP MOTIF, NUCLEOTIDE INTRINSIC GTPASE ACTIVITY, GTP HYDROLYSIS, GTP HYDROLYSIS A GTPASE ACTIVATING PROTEIN (GAP), PROTEIN TRANSPORT, HYDROLA HYDROLASE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4IRU     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LEPB  A 296 2341 24
2  Protein   RAS-RELATED PROTEIN RAB-1A  B 170 1338 24
3  Protein   LEPB  C 296 2341 24
4  Protein   RAS-RELATED PROTEIN RAB-1A  D 170 1338 24
5  Protein   LEPB  E 295 2335 24
6  Protein   RAS-RELATED PROTEIN RAB-1A  F 170 1338 24
7  Ligand   LEPB  A 12 0 48
8  Ligand   RAS-RELATED PROTEIN RAB-1A  B 7 0 48
9  Ligand   LEPB  C 8 0 31
10  Ligand   RAS-RELATED PROTEIN RAB-1A  D 5 0 41
11  Ligand   RAS-RELATED PROTEIN RAB-1A  F 3 0 33
12 Water     34 0 34
total       1466 11031 379
Proteins
Unit 1 SER325 LEU326 LYS327 PRO328 LEU329 THR330 LEU331 LEU332 MSE333 THR334 SER335 SER336 THR337 SER338 PHE339 SER340 GLU341 THR342 ILE343 ASN344 GLN345 TRP346 ALA347 ASP348 ILE349 LEU350 LYS351 THR352 THR353 ASP354 MSE355 GLU356 LYS357 PHE358 SER359 PHE360 ASP361 SER362 ASN363 PRO364 ILE365 ASN366 LEU367 LEU368 GLU369 LEU370 VAL371 LYS372 GLN373 PHE374 ASN375 LEU376 TYR377 VAL378 ASP379 GLU380 LEU381 ALA382 ILE383 THR384 CYS385 GLU386 ALA387 ASN388 ASN389 VAL390 TRP391 ALA392 LYS393 GLU394 ARG395 ILE396 ASP397 SER398 THR399 PRO400 ASN401 LEU402 PHE403 ALA404 LEU405 TYR406 ASP407 ASN408 SER409 GLY410 GLY411 GLU412 ALA413 ILE414 HIS415 GLY416 HIS417 ALA418 PHE419 VAL420 PRO421 TYR422 TYR423 LYS424 GLU425 SER426 ILE427 VAL428 LEU429 ARG430 ARG431 LEU432 PHE433 THR434 VAL435 ASP436 PRO437 ASN438 THR439 PHE440 ASN441 LEU442 SER443 ARG444 PHE445 ALA446 ALA447 PHE448 GLU449 GLY450 PRO451 CYS452 GLN453 LEU454 TYR455 CYS456 LYS457 GLU458 HIS459 LYS460 ASP461 SER462 ALA463 TRP464 VAL465 LYS466 ILE467 GLN468 THR469 LEU470 LEU471 THR472 LEU473 GLY474 ASN475 GLY476 ILE477 ILE478 ASN479 THR480 LEU481 LYS482 ILE483 ILE484 LYS485 GLN486 ALA487 GLN488 ALA489 PHE490 GLY491 ILE492 ASP493 GLU494 ALA495 VAL496 THR497 GLU498 ASN499 LEU500 LYS501 ALA502 LEU503 LYS504 GLU505 GLN506 PHE507 ILE508 ALA509 PHE510 GLN511 LEU512 ALA513 GLU514 ALA515 ASP516 ILE517 LYS518 GLU519 SER520 LEU521 LYS522 ALA523 PRO524 SER525 PHE526 ALA527 GLU528 PRO529 LEU530 PRO531 ASN532 LYS533 GLU534 SER535 GLU536 PHE537 PHE538 TYR539 PRO540 ILE541 ASP542 GLU543 LYS544 ALA545 LEU546 ALA547 LYS548 MSE549 ASN550 GLY551 TYR552 GLN553 LEU554 ALA555 THR556 ILE557 CYS558 LEU559 GLU560 GLU561 LEU562 ASN563 SER564 PRO565 LYS566 PRO567 SER568 PRO569 LEU570 ILE571 GLU572 ARG573 ILE574 LEU575 SER576 ASN577 LYS578 LYS579 PHE580 TRP581 LYS582 ARG583 ILE584 ASN585 SER586 ALA587 PHE588 GLU589 SER590 GLY591 VAL592 PHE593 LYS594 GLY595 ARG596 THR597 ASP598 ASP599 PRO600 ALA601 GLY602 LYS603 ILE604 ALA605 LYS606 ILE607 ARG608 GLU609 TRP610 HIS611 GLN612 LEU613 LEU614 GLN615 ILE616 SER617 GLY618 LYS619 LYS620
Unit 2 GLU7 TYR8 ASP9 TYR10 LEU11 PHE12 LYS13 LEU14 LEU15 LEU16 ILE17 GLY18 ASP19 SER20 GLY21 VAL22 GLY23 LYS24 SER25 CYS26 LEU27 LEU28 LEU29 ARG30 PHE31 ALA32 ASP33 ASP34 THR35 TYR36 THR37 GLU38 SER39 TYR40 ILE41 SER42 THR43 ILE44 GLY45 VAL46 ASP47 PHE48 LYS49 ILE50 ARG51 THR52 ILE53 GLU54 LEU55 ASP56 GLY57 LYS58 THR59A ILE60 LYS61 LEU62 GLN63 ILE64 TRP65 ASP66 THR67 ALA68 GLY69 GLN70 GLU71 ARG72 PHE73 ARG74 THR75 ILE76 THR77 SER78 SER79 TYR80 TYR81 ARG82 GLY83 ALA84 HIS85 GLY86 ILE87 ILE88 VAL89 VAL90 TYR91 ASP92 VAL93 THR94 ASP95 GLN96 GLU97 SER98 PHE99 ASN100 ASN101 VAL102 LYS103 GLN104 TRP105 LEU106 GLN107 GLU108 ILE109 ASP110 ARG111 TYR112 ALA113 SER114 GLU115 ASN116 VAL117 ASN118 LYS119 LEU120 LEU121 VAL122 GLY123 ASN124 LYS125 CYS126 ASP127 LEU128 THR129 THR130 LYS131 LYS132 VAL133 VAL134 ASP135 TYR136 THR137 THR138 ALA139 LYS140 GLU141 PHE142 ALA143 ASP144 SER145 LEU146 GLY147 ILE148 PRO149 PHE150 LEU151 GLU152 THR153 SER154 ALA155 LYS156 ASN157 ALA158 THR159 ASN160 VAL161 GLU162 GLN163 SER164 PHE165 MSE166 THR167 MSE168 ALA169 ALA170 GLU171 ILE172 LYS173 LYS174 ARG175 MSE176
Unit 3 SER325 LEU326 LYS327 PRO328 LEU329 THR330 LEU331 LEU332 MSE333 THR334 SER335 SER336 THR337 SER338 PHE339 SER340 GLU341 THR342 ILE343 ASN344 GLN345 TRP346 ALA347 ASP348 ILE349 LEU350 LYS351 THR352 THR353 ASP354 MSE355 GLU356 LYS357 PHE358 SER359 PHE360 ASP361 SER362 ASN363 PRO364 ILE365 ASN366 LEU367 LEU368 GLU369 LEU370 VAL371 LYS372 GLN373 PHE374 ASN375 LEU376 TYR377 VAL378 ASP379 GLU380 LEU381 ALA382 ILE383 THR384 CYS385 GLU386 ALA387 ASN388 ASN389 VAL390 TRP391 ALA392 LYS393 GLU394 ARG395 ILE396 ASP397 SER398 THR399 PRO400 ASN401 LEU402 PHE403 ALA404 LEU405 TYR406 ASP407 ASN408 SER409 GLY410 GLY411 GLU412 ALA413 ILE414 HIS415 GLY416 HIS417 ALA418 PHE419 VAL420 PRO421 TYR422 TYR423 LYS424 GLU425 SER426 ILE427 VAL428 LEU429 ARG430 ARG431 LEU432 PHE433 THR434 VAL435 ASP436 PRO437 ASN438 THR439 PHE440 ASN441 LEU442 SER443 ARG444 PHE445 ALA446 ALA447 PHE448 GLU449 GLY450 PRO451 CYS452 GLN453 LEU454 TYR455 CYS456 LYS457 GLU458 HIS459 LYS460 ASP461 SER462 ALA463 TRP464 VAL465 LYS466 ILE467 GLN468 THR469 LEU470 LEU471 THR472 LEU473 GLY474 ASN475 GLY476 ILE477 ILE478 ASN479 THR480 LEU481 LYS482 ILE483 ILE484 LYS485 GLN486 ALA487 GLN488 ALA489 PHE490 GLY491 ILE492 ASP493 GLU494 ALA495 VAL496 THR497 GLU498 ASN499 LEU500 LYS501 ALA502 LEU503 LYS504 GLU505 GLN506 PHE507 ILE508 ALA509 PHE510 GLN511 LEU512 ALA513 GLU514 ALA515 ASP516 ILE517 LYS518 GLU519 SER520 LEU521 LYS522 ALA523 PRO524 SER525 PHE526 ALA527 GLU528 PRO529 LEU530 PRO531 ASN532 LYS533 GLU534 SER535 GLU536 PHE537 PHE538 TYR539 PRO540 ILE541 ASP542 GLU543 LYS544 ALA545 LEU546 ALA547 LYS548 MSE549 ASN550 GLY551 TYR552 GLN553 LEU554 ALA555 THR556 ILE557 CYS558 LEU559 GLU560 GLU561 LEU562 ASN563 SER564 PRO565 LYS566 PRO567 SER568 PRO569 LEU570 ILE571 GLU572 ARG573 ILE574 LEU575 SER576 ASN577 LYS578 LYS579 PHE580 TRP581 LYS582 ARG583 ILE584 ASN585 SER586 ALA587 PHE588 GLU589 SER590 GLY591 VAL592 PHE593 LYS594 GLY595 ARG596 THR597 ASP598 ASP599 PRO600 ALA601 GLY602 LYS603 ILE604 ALA605 LYS606 ILE607 ARG608 GLU609 TRP610 HIS611 GLN612 LEU613 LEU614 GLN615 ILE616 SER617 GLY618 LYS619 LYS620
Unit 4 GLU7 TYR8 ASP9 TYR10 LEU11 PHE12 LYS13 LEU14 LEU15 LEU16 ILE17 GLY18 ASP19 SER20 GLY21 VAL22 GLY23 LYS24 SER25 CYS26 LEU27 LEU28 LEU29 ARG30 PHE31 ALA32 ASP33 ASP34 THR35 TYR36 THR37 GLU38 SER39 TYR40 ILE41 SER42 THR43 ILE44 GLY45 VAL46 ASP47 PHE48 LYS49 ILE50 ARG51 THR52 ILE53 GLU54 LEU55 ASP56 GLY57 LYS58 THR59A ILE60 LYS61 LEU62 GLN63 ILE64 TRP65 ASP66 THR67 ALA68 GLY69 GLN70 GLU71 ARG72 PHE73 ARG74 THR75 ILE76 THR77 SER78 SER79 TYR80 TYR81 ARG82 GLY83 ALA84 HIS85 GLY86 ILE87 ILE88 VAL89 VAL90 TYR91 ASP92 VAL93 THR94 ASP95 GLN96 GLU97 SER98 PHE99 ASN100 ASN101 VAL102 LYS103 GLN104 TRP105 LEU106 GLN107 GLU108 ILE109 ASP110 ARG111 TYR112 ALA113 SER114 GLU115 ASN116 VAL117 ASN118 LYS119 LEU120 LEU121 VAL122 GLY123 ASN124 LYS125 CYS126 ASP127 LEU128 THR129 THR130 LYS131 LYS132 VAL133 VAL134 ASP135 TYR136 THR137 THR138 ALA139 LYS140 GLU141 PHE142 ALA143 ASP144 SER145 LEU146 GLY147 ILE148 PRO149 PHE150 LEU151 GLU152 THR153 SER154 ALA155 LYS156 ASN157 ALA158 THR159 ASN160 VAL161 GLU162 GLN163 SER164 PHE165 MSE166 THR167 MSE168 ALA169 ALA170 GLU171 ILE172 LYS173 LYS174 ARG175 MSE176
Unit 5 SER325 LEU326 LYS327 PRO328 LEU329 THR330 LEU331 LEU332 MSE333 THR334 SER335 SER336 THR337 SER338 PHE339 SER340 GLU341 THR342 ILE343 ASN344 GLN345 TRP346 ALA347 ASP348 ILE349 LEU350 LYS351 THR352 THR353 ASP354 MSE355 GLU356 LYS357 PHE358 SER359 PHE360 ASP361 SER362 ASN363 PRO364 ILE365 ASN366 LEU367 LEU368 GLU369 LEU370 VAL371 LYS372 GLN373 PHE374 ASN375 LEU376 TYR377 VAL378 ASP379 GLU380 LEU381 ALA382 ILE383 THR384 CYS385 GLU386 ALA387 ASN388 ASN389 VAL390 TRP391 ALA392 LYS393 GLU394 ARG395 ILE396 ASP397 THR399 PRO400 ASN401 LEU402 PHE403 ALA404 LEU405 TYR406 ASP407 ASN408 SER409 GLY410 GLY411 GLU412 ALA413 ILE414 HIS415 GLY416 HIS417 ALA418 PHE419 VAL420 PRO421 TYR422 TYR423 LYS424 GLU425 SER426 ILE427 VAL428 LEU429 ARG430 ARG431 LEU432 PHE433 THR434 VAL435 ASP436 PRO437 ASN438 THR439 PHE440 ASN441 LEU442 SER443 ARG444 PHE445 ALA446 ALA447 PHE448 GLU449 GLY450 PRO451 CYS452 GLN453 LEU454 TYR455 CYS456 LYS457 GLU458 HIS459 LYS460 ASP461 SER462 ALA463 TRP464 VAL465 LYS466 ILE467 GLN468 THR469 LEU470 LEU471 THR472 LEU473 GLY474 ASN475 GLY476 ILE477 ILE478 ASN479 THR480 LEU481 LYS482 ILE483 ILE484 LYS485 GLN486 ALA487 GLN488 ALA489 PHE490 GLY491 ILE492 ASP493 GLU494 ALA495 VAL496 THR497 GLU498 ASN499 LEU500 LYS501 ALA502 LEU503 LYS504 GLU505 GLN506 PHE507 ILE508 ALA509 PHE510 GLN511 LEU512 ALA513 GLU514 ALA515 ASP516 ILE517 LYS518 GLU519 SER520 LEU521 LYS522 ALA523 PRO524 SER525 PHE526 ALA527 GLU528 PRO529 LEU530 PRO531 ASN532 LYS533 GLU534 SER535 GLU536 PHE537 PHE538 TYR539 PRO540 ILE541 ASP542 GLU543 LYS544 ALA545 LEU546 ALA547 LYS548 MSE549 ASN550 GLY551 TYR552 GLN553 LEU554 ALA555 THR556 ILE557 CYS558 LEU559 GLU560 GLU561 LEU562 ASN563 SER564 PRO565 LYS566 PRO567 SER568 PRO569 LEU570 ILE571 GLU572 ARG573 ILE574 LEU575 SER576 ASN577 LYS578 LYS579 PHE580 TRP581 LYS582 ARG583 ILE584 ASN585 SER586 ALA587 PHE588 GLU589 SER590 GLY591 VAL592 PHE593 LYS594 GLY595 ARG596 THR597 ASP598 ASP599 PRO600 ALA601 GLY602 LYS603 ILE604 ALA605 LYS606 ILE607 ARG608 GLU609 TRP610 HIS611 GLN612 LEU613 LEU614 GLN615 ILE616 SER617 GLY618 LYS619 LYS620
Unit 6 GLU7 TYR8 ASP9 TYR10 LEU11 PHE12 LYS13 LEU14 LEU15 LEU16 ILE17 GLY18 ASP19 SER20 GLY21 VAL22 GLY23 LYS24 SER25 CYS26 LEU27 LEU28 LEU29 ARG30 PHE31 ALA32 ASP33 ASP34 THR35 TYR36 THR37 GLU38 SER39 TYR40 ILE41 SER42 THR43 ILE44 GLY45 VAL46 ASP47 PHE48 LYS49 ILE50 ARG51 THR52 ILE53 GLU54 LEU55 ASP56 GLY57 LYS58 THR59 ILE60 LYS61 LEU62 GLN63 ILE64 TRP65 ASP66 THR67 ALA68 GLY69 GLN70 GLU71 ARG72 PHE73 ARG74 THR75 ILE76 THR77 SER78 SER79 TYR80 TYR81 ARG82 GLY83 ALA84 HIS85 GLY86 ILE87 ILE88 VAL89 VAL90 TYR91 ASP92 VAL93 THR94 ASP95 GLN96 GLU97 SER98 PHE99 ASN100 ASN101 VAL102 LYS103 GLN104 TRP105 LEU106 GLN107 GLU108 ILE109 ASP110 ARG111 TYR112 ALA113 SER114 GLU115 ASN116 VAL117 ASN118 LYS119 LEU120 LEU121 VAL122 GLY123 ASN124 LYS125 CYS126 ASP127 LEU128 THR129 THR130 LYS131 LYS132 VAL133 VAL134 ASP135 TYR136 THR137 THR138 ALA139 LYS140 GLU141 PHE142 ALA143 ASP144 SER145 LEU146 GLY147 ILE148 PRO149 PHE150 LEU151 GLU152 THR153 SER154 ALA155 LYS156 ASN157 ALA158 THR159 ASN160 VAL161 GLU162 GLN163 SER164 PHE165 MSE166 THR167 MSE168 ALA169 ALA170 GLU171 ILE172 LYS173 LYS174 ARG175 MSE176
Ligands
Unit 7 ACT901 ACT902 GOL903 GOL904 GOL905 GOL906 GOL907 GOL908 K909 K910 K911 K912
Unit 8 MG201 GDP202 AF3203 ACT204 ACT205 GOL206 K207
Unit 9 ACT701 ACT702 ACT703 ACT704 ACT705 ACT706 GOL707 K708
Unit 10 MG201 GDP202 AF3203 ACT204 ACT205
Unit 11 MG200 GDP201 AF3202
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany