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4IRU
Asym. Unit
Info
Asym.Unit (244 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEPB GAP CORE IN A TRANSITION STATE MIMETIC COMPLEX WITH RAB1A AND ALF3
Authors
:
A. K. Mishra, C. M. Delcampo, R. E. Collins, C. R. Roy, D. G. Lambright
Date
:
15 Jan 13 (Deposition) - 10 Jul 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Arginine Finger, Glutamate Finger, P-Loop Motif, Nucleotide Binding, Intrinsic Gtpase Activity, Gtp Hydrolysis, Gtp Hydrolysis Activator, Gtpase Activating Protein (Gap), Protein Transport, Hydrolase- Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Mishra, C. M. Del Campo, R. E. Collins, C. R. Roy, D. G. Lambright
The Legionella Pneumophila Gtpase Activating Protein Lepb Accelerates Rab1 Deactivation By A Non-Canonical Hydrolytic Mechanism.
J. Biol. Chem. V. 288 24000 2013
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Hetero Components
(7, 53)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
2c: ALUMINUM FLUORIDE (AF3c)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
5a: POTASSIUM ION (Ka)
5b: POTASSIUM ION (Kb)
5c: POTASSIUM ION (Kc)
5d: POTASSIUM ION (Kd)
5e: POTASSIUM ION (Ke)
5f: POTASSIUM ION (Kf)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
7a: SELENOMETHIONINE (MSEa)
7b: SELENOMETHIONINE (MSEb)
7c: SELENOMETHIONINE (MSEc)
7d: SELENOMETHIONINE (MSEd)
7e: SELENOMETHIONINE (MSEe)
7f: SELENOMETHIONINE (MSEf)
7g: SELENOMETHIONINE (MSEg)
7h: SELENOMETHIONINE (MSEh)
7i: SELENOMETHIONINE (MSEi)
7j: SELENOMETHIONINE (MSEj)
7k: SELENOMETHIONINE (MSEk)
7l: SELENOMETHIONINE (MSEl)
7m: SELENOMETHIONINE (MSEm)
7n: SELENOMETHIONINE (MSEn)
7o: SELENOMETHIONINE (MSEo)
7p: SELENOMETHIONINE (MSEp)
7q: SELENOMETHIONINE (MSEq)
7r: SELENOMETHIONINE (MSEr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
12
Ligand/Ion
ACETATE ION
2
AF3
3
Ligand/Ion
ALUMINUM FLUORIDE
3
GDP
3
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
8
Ligand/Ion
GLYCEROL
5
K
6
Ligand/Ion
POTASSIUM ION
6
MG
3
Ligand/Ion
MAGNESIUM ION
7
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:599 , LYS A:606
BINDING SITE FOR RESIDUE ACT A 901
02
AC2
SOFTWARE
LEU A:367 , LEU A:368 , K A:910
BINDING SITE FOR RESIDUE ACT A 902
03
AC3
SOFTWARE
THR A:330 , LEU A:332 , PRO C:328 , LEU C:329 , THR C:330
BINDING SITE FOR RESIDUE GOL A 903
04
AC4
SOFTWARE
ARG A:395 , PRO A:400 , TYR A:539 , PRO A:540
BINDING SITE FOR RESIDUE GOL A 904
05
AC5
SOFTWARE
LEU A:562 , ASN A:563 , SER A:564
BINDING SITE FOR RESIDUE GOL A 905
06
AC6
SOFTWARE
HIS A:415 , ASP B:92
BINDING SITE FOR RESIDUE GOL A 906
07
AC7
SOFTWARE
HIS A:417 , SER A:443 , ARG A:444 , ARG A:596 , THR A:597 , ASP A:598 , HOH A:1006
BINDING SITE FOR RESIDUE GOL A 907
08
AC8
SOFTWARE
SER A:564 , PRO A:565 , LYS A:566 , PRO A:567 , SER A:568
BINDING SITE FOR RESIDUE GOL A 908
09
AC9
SOFTWARE
GLU A:536 , ASN A:563
BINDING SITE FOR RESIDUE K A 909
10
BC1
SOFTWARE
ASN A:363 , ACT A:902
BINDING SITE FOR RESIDUE K A 910
11
BC2
SOFTWARE
SER A:564 , PRO A:565 , GLU A:609
BINDING SITE FOR RESIDUE K A 911
12
BC3
SOFTWARE
THR A:384
BINDING SITE FOR RESIDUE K A 912
13
BC4
SOFTWARE
SER B:25 , THR B:43 , GDP B:202 , AF3 B:203 , HOH B:302 , HOH B:303
BINDING SITE FOR RESIDUE MG B 201
14
BC5
SOFTWARE
ARG A:444 , GLY B:21 , VAL B:22 , GLY B:23 , LYS B:24 , SER B:25 , CYS B:26 , TYR B:36 , SER B:39 , TYR B:40 , ILE B:41 , ASN B:124 , LYS B:125 , ASP B:127 , LEU B:128 , SER B:154 , ALA B:155 , LYS B:156 , MG B:201 , AF3 B:203 , HOH B:302 , HOH B:303
BINDING SITE FOR RESIDUE GDP B 202
15
BC6
SOFTWARE
ARG A:444 , ASP B:19 , SER B:20 , LYS B:24 , SER B:42 , THR B:43 , GLY B:69 , GLN B:70 , MG B:201 , GDP B:202 , HOH B:302 , HOH B:303 , HOH B:308
BINDING SITE FOR RESIDUE AF3 B 203
16
BC7
SOFTWARE
SER B:79 , ARG B:82 , GOL B:206
BINDING SITE FOR RESIDUE ACT B 204
17
BC8
SOFTWARE
ASP B:19 , ARG B:74 , GLN B:104
BINDING SITE FOR RESIDUE ACT B 205
18
BC9
SOFTWARE
LYS B:13 , GLN B:63 , TRP B:65 , TYR B:80 , ARG B:82 , ACT B:204
BINDING SITE FOR RESIDUE GOL B 206
19
CC1
SOFTWARE
HIS C:415 , ASP D:92
BINDING SITE FOR RESIDUE ACT C 701
20
CC2
SOFTWARE
ASP C:599 , LYS C:606 , ACT C:706
BINDING SITE FOR RESIDUE ACT C 702
21
CC3
SOFTWARE
HIS C:417 , SER C:443 , ARG C:444 , ARG C:596 , THR C:597 , ASP C:598
BINDING SITE FOR RESIDUE ACT C 703
22
CC4
SOFTWARE
ASN C:389 , PRO C:524 , PHE C:526 , ALA C:527 , GLU C:528
BINDING SITE FOR RESIDUE ACT C 704
23
CC5
SOFTWARE
ASN C:532 , GLU C:534 , SER C:535 , TYR C:539 , PRO C:540 , ILE C:541
BINDING SITE FOR RESIDUE ACT C 705
24
CC6
SOFTWARE
LEU C:562 , SER C:564 , ACT C:702
BINDING SITE FOR RESIDUE ACT C 706
25
CC7
SOFTWARE
GLU C:536
BINDING SITE FOR RESIDUE K C 708
26
CC8
SOFTWARE
SER D:25 , THR D:43 , GDP D:202 , AF3 D:203 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE MG D 201
27
CC9
SOFTWARE
HIS C:415 , ARG C:444 , SER D:20 , GLY D:21 , VAL D:22 , GLY D:23 , LYS D:24 , SER D:25 , CYS D:26 , TYR D:36 , SER D:39 , TYR D:40 , ILE D:41 , ASN D:124 , LYS D:125 , ASP D:127 , LEU D:128 , SER D:154 , ALA D:155 , LYS D:156 , MG D:201 , AF3 D:203 , ACT D:205 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE GDP D 202
28
DC1
SOFTWARE
ARG C:444 , SER D:20 , GLY D:21 , LYS D:24 , SER D:42 , THR D:43 , GLY D:69 , GLN D:70 , MG D:201 , GDP D:202 , HOH D:301 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE AF3 D 203
29
DC2
SOFTWARE
ASP D:19 , GLU D:71 , ARG D:74 , GLN D:104
BINDING SITE FOR RESIDUE ACT D 204
30
DC3
SOFTWARE
GLU D:38 , LEU D:128 , LYS D:156 , GDP D:202
BINDING SITE FOR RESIDUE ACT D 205
31
DC4
SOFTWARE
LYS F:24 , SER F:25 , ASP F:66 , GDP F:201 , AF3 F:202
BINDING SITE FOR RESIDUE MG F 200
32
DC5
SOFTWARE
ARG E:444 , ASP F:19 , GLY F:21 , VAL F:22 , GLY F:23 , LYS F:24 , SER F:25 , CYS F:26 , TYR F:36 , GLU F:38 , TYR F:40 , ILE F:41 , ASN F:124 , LYS F:125 , LEU F:128 , SER F:154 , ALA F:155 , LYS F:156 , MG F:200 , AF3 F:202
BINDING SITE FOR RESIDUE GDP F 201
33
DC6
SOFTWARE
ASP F:19 , SER F:20 , GLY F:21 , LYS F:24 , THR F:43 , THR F:67 , GLN F:70 , MG F:200 , GDP F:201
BINDING SITE FOR RESIDUE AF3 F 202
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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)
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Hetero
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All Atoms
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Protein & NOT Site
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Chain E
Chain F
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