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4IRU
Biol. Unit 2
Info
Asym.Unit (244 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEPB GAP CORE IN A TRANSITION STATE MIMETIC COMPLEX WITH RAB1A AND ALF3
Authors
:
A. K. Mishra, C. M. Delcampo, R. E. Collins, C. R. Roy, D. G. Lambright
Date
:
15 Jan 13 (Deposition) - 10 Jul 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Arginine Finger, Glutamate Finger, P-Loop Motif, Nucleotide Binding, Intrinsic Gtpase Activity, Gtp Hydrolysis, Gtp Hydrolysis Activator, Gtpase Activating Protein (Gap), Protein Transport, Hydrolase- Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Mishra, C. M. Del Campo, R. E. Collins, C. R. Roy, D. G. Lambright
The Legionella Pneumophila Gtpase Activating Protein Lepb Accelerates Rab1 Deactivation By A Non-Canonical Hydrolytic Mechanism.
J. Biol. Chem. V. 288 24000 2013
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
2c: ALUMINUM FLUORIDE (AF3c)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
5a: POTASSIUM ION (Ka)
5b: POTASSIUM ION (Kb)
5c: POTASSIUM ION (Kc)
5d: POTASSIUM ION (Kd)
5e: POTASSIUM ION (Ke)
5f: POTASSIUM ION (Kf)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
7a: SELENOMETHIONINE (MSEa)
7b: SELENOMETHIONINE (MSEb)
7c: SELENOMETHIONINE (MSEc)
7d: SELENOMETHIONINE (MSEd)
7e: SELENOMETHIONINE (MSEe)
7f: SELENOMETHIONINE (MSEf)
7g: SELENOMETHIONINE (MSEg)
7h: SELENOMETHIONINE (MSEh)
7i: SELENOMETHIONINE (MSEi)
7j: SELENOMETHIONINE (MSEj)
7k: SELENOMETHIONINE (MSEk)
7l: SELENOMETHIONINE (MSEl)
7m: SELENOMETHIONINE (MSEm)
7n: SELENOMETHIONINE (MSEn)
7o: SELENOMETHIONINE (MSEo)
7p: SELENOMETHIONINE (MSEp)
7q: SELENOMETHIONINE (MSEq)
7r: SELENOMETHIONINE (MSEr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
2
AF3
1
Ligand/Ion
ALUMINUM FLUORIDE
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GOL
1
Ligand/Ion
GLYCEROL
5
K
-1
Ligand/Ion
POTASSIUM ION
6
MG
-1
Ligand/Ion
MAGNESIUM ION
7
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(13, 13)
Info
All Sites
01: AC3 (SOFTWARE)
02: CC1 (SOFTWARE)
03: CC2 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC7 (SOFTWARE)
09: CC8 (SOFTWARE)
10: CC9 (SOFTWARE)
11: DC1 (SOFTWARE)
12: DC2 (SOFTWARE)
13: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
THR A:330 , LEU A:332 , PRO C:328 , LEU C:329 , THR C:330
BINDING SITE FOR RESIDUE GOL A 903
02
CC1
SOFTWARE
HIS C:415 , ASP D:92
BINDING SITE FOR RESIDUE ACT C 701
03
CC2
SOFTWARE
ASP C:599 , LYS C:606 , ACT C:706
BINDING SITE FOR RESIDUE ACT C 702
04
CC3
SOFTWARE
HIS C:417 , SER C:443 , ARG C:444 , ARG C:596 , THR C:597 , ASP C:598
BINDING SITE FOR RESIDUE ACT C 703
05
CC4
SOFTWARE
ASN C:389 , PRO C:524 , PHE C:526 , ALA C:527 , GLU C:528
BINDING SITE FOR RESIDUE ACT C 704
06
CC5
SOFTWARE
ASN C:532 , GLU C:534 , SER C:535 , TYR C:539 , PRO C:540 , ILE C:541
BINDING SITE FOR RESIDUE ACT C 705
07
CC6
SOFTWARE
LEU C:562 , SER C:564 , ACT C:702
BINDING SITE FOR RESIDUE ACT C 706
08
CC7
SOFTWARE
GLU C:536
BINDING SITE FOR RESIDUE K C 708
09
CC8
SOFTWARE
SER D:25 , THR D:43 , GDP D:202 , AF3 D:203 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE MG D 201
10
CC9
SOFTWARE
HIS C:415 , ARG C:444 , SER D:20 , GLY D:21 , VAL D:22 , GLY D:23 , LYS D:24 , SER D:25 , CYS D:26 , TYR D:36 , SER D:39 , TYR D:40 , ILE D:41 , ASN D:124 , LYS D:125 , ASP D:127 , LEU D:128 , SER D:154 , ALA D:155 , LYS D:156 , MG D:201 , AF3 D:203 , ACT D:205 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE GDP D 202
11
DC1
SOFTWARE
ARG C:444 , SER D:20 , GLY D:21 , LYS D:24 , SER D:42 , THR D:43 , GLY D:69 , GLN D:70 , MG D:201 , GDP D:202 , HOH D:301 , HOH D:302 , HOH D:303
BINDING SITE FOR RESIDUE AF3 D 203
12
DC2
SOFTWARE
ASP D:19 , GLU D:71 , ARG D:74 , GLN D:104
BINDING SITE FOR RESIDUE ACT D 204
13
DC3
SOFTWARE
GLU D:38 , LEU D:128 , LYS D:156 , GDP D:202
BINDING SITE FOR RESIDUE ACT D 205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (244 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
Biol.Unit 3 (81 KB)
Header - Biol.Unit 3
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