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(-) Description

Title :  CRYSTAL STRUCTURE OF AAR2P IN COMPLEX WITH THE PRP8P RNASEH AND JAB1/MPN DOMAINS
 
Authors :  G. Weber, A. C. Heroven, K. F. Santos, M. C. Wahl
Date :  31 Dec 12  (Deposition) - 13 Mar 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  U5 Snrnp Assembly, Aar2, Prp8, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Weber, V. F. Cristao, K. F. Santos, S. M. Jovin, A. C. Heroven, N. Holton, R. Luhrmann, J. D. Beggs, M. C. Wahl
Structural Basis For Dual Roles Of Aar2P In U5 Snrnp Assembly.
Genes Dev. V. 27 525 2013
PubMed-ID: 23442228  |  Reference-DOI: 10.1101/GAD.213207.113

(-) Compounds

Molecule 1 - A1 CISTRON-SPLICING FACTOR AAR2
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneAAR2, YBL074C, YBL06.06, YBL0611
    MutationYES
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C
 
Molecule 2 - PRE-MRNA-SPLICING FACTOR 8
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentYPRP8 RNASEH (UNP RESIDUES 1835-2090)
    GenePRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C
 
Molecule 3 - PRE-MRNA-SPLICING FACTOR 8
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentYPRP8 JAB1/MPN (UNP RESIDUES 2147-2413)
    GenePRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO C:2352 , SER C:2353 , GLY C:2354 , ASN C:2373 , HOH C:2637 , HOH C:2716 , HOH C:2738BINDING SITE FOR RESIDUE EPE C 2501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ILG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ILG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ILG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ILG)

(-) Exons   (0, 0)

(no "Exon" information available for 4ILG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeee..eeeee.......eeeee.....eeeeeee.......eeeee......eeeeee....eeeeee..hhhhhhhhhhhhhhhh..ee.......hhhhhhhh..hhhhhhhhh.......eeee...ee.hhhh......hhh.ee................hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ilg A    1 MNTVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDCRMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSSMTTVQENELSSSSSDPAHSLNYTVINFKSREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFGNYGSSLQWHAMIELICSSATVPKHMLDKLDEILYYQIKTLPEQYSDILLNERVWNICLYSSFQKNSLHNTEKIMENKYPELLDDEHNPTIVGGLYYQRP  355
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      |173       183       193       203       213       223       233       243       253       263       273       283       293       303       313   ||  344       354 
                                                                                                                                                                                      157|                                                                                                                                               317|                
                                                                                                                                                                                       171                                                                                                                                                339                

Chain B from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                             
               SCOP domains d4ilgb_ B: Pre-mRNA-splicing factor 8, Prp8                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhh...eeeee.....eeeeee.....eeeeee.eeeeee.....eeeeeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhh......eee......hhhhhhhhhhhhhhhhhh...eeeeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4ilg B 1834 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIILG 2085
                                  1843      1853      1863      1873      1883      1893      1903      1913      1923      1933      1943      1953      1963      1973      1983      1993      2003      2013      2023      2033      2043      2053      2063      2073      2083  

Chain C from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.eeeee.........eeeeehhhhhhhhhh.......eeeeeeee......eeeeeeee...eeee..eeee...............eeeeeeeee.......hhhhhhhhhhhhh......eeeeeeee..eeeeeeeeehhhhhhhhhhh...........hhh.eeeeeeeee.....eeeee.........hhhhh.......eee.......hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ilg C 2148 SKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHF 2392
                                  2157      2167      2177      2187      2197      2207      2217      2227      2237      2247      2257      2267      2277      2287      2297      2307      2317      2327      2337      2347      2357      2367      2377      2387     

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ILG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ILG)

(-) Gene Ontology  (23, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AAR2_YEAST | P323573sbs 3sbt 3zef 4i43 4ilh 4ili
        PRP8_YEAST | P333342og4 3e66 3e9o 3e9p 3jcm 3sbg 3sbt 3zef 4bgd 4i43 4ilh 4ilj 5dca 5gam 5gan 5gao 5gap 5gm6 5gmk 5lj3 5lj5 5lqw 5m52 5m5p 5mps 5mq0 5wsg

(-) Related Entries Specified in the PDB File

4ilh 4ili 4ilj