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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AAR2P C-TERMINAL DELETION MUTANT IN CONPLEX WITH PRP8P RNASEH
 
Authors :  G. Weber, A. C. Heroven, K. F. Santos, M. C. Wahl
Date :  31 Dec 12  (Deposition) - 27 Mar 13  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  U5 Snrnp Assembly, Aar2, Prp8, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Weber, V. Cristao, K. F. Santos, S. Mozzafari Jovin, A. C. Heroven, R. Luehrmann, J. D. Beggs, M. C. Wahl
Structural Basis For The Aar2P-Mediated Regulation Of Prp8P Interactions With Brr2P And U4/U6 Di-Snrna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PRE-MRNA-SPLICING FACTOR 8
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: YPRP8 RNASEH (UNP RESIDUES 1835-2096)
    Gene: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - A1 CISTRON-SPLICING FACTOR AAR2
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AAR2, YBL074C, YBL06.06, YBL0611
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ILH)

(-) Sites  (0, 0)

(no "Site" information available for 4ILH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ILH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ILH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ILH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ILH)

(-) Exons   (0, 0)

(no "Exon" information available for 4ILH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                                
               SCOP domains d4ilha_ A: Pre-mRNA-splicing factor 8, Prp8                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee.....eeeeee.....eeeeee.eeeeee.....eeeeeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhh...eeeeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ilh A 1833 GAMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIILGQN 2087
                                  1842      1852      1862      1872      1882      1892      1902      1912      1922      1932      1942      1952      1962      1972      1982      1992      2002      2012      2022      2032      2042      2052      2062      2072      2082     


Chain B from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeee..eeeee.......eeeee.....eeeeee........eeeeehhhhh.eeeeee....eeeeee..hhhhhhhhhhhhhhhh.eee.......hhhhhhhh..hhhhhhhhh.......eeee...eehhhhh.ee........hhhhh...hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ilh B    1 MNTVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDCRMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSSMTTVQENEHSLNYTVINFKSREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFGNYGSSLQWHAMIELICSSATVPKHMLDKLDEILYYQIKTLPEQYSDILLNERVWNICLYSSFQKNSLHNTEKIMENKYPELL  317
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150||     182       192       202       212       222       232       242       252       262       272       282       292       302       312     
                                                                                                                                                                                151|                                                                                                                                               
                                                                                                                                                                                 174
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ILH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ILH)

(-) Gene Ontology  (23, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ilh
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  AAR2_YEAST | P32357
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  PRP8_YEAST | P33334
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AAR2_YEAST | P32357: 3sbs 3sbt 3zef 4i43 4ilg 4ili
        PRP8_YEAST | P33334: 2og4 3e66 3e9o 3e9p 3jcm 3sbg 3sbt 3zef 4bgd 4i43 4ilg 4ilj 5dca 5gam 5gan 5gao 5gap 5gm6 5gmk 5lj3 5lj5 5lqw 5m52 5m5p 5mps 5mq0 5wsg

(-) Related Entries Specified in the PDB File

4ilg 4ili 4ilj