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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  HEAD REGION OF THE YEAST SPLICEOSOMAL U4/U6.U5 TRI-SNRNP
 
Authors :  T. H. D. Nguyen, W. P. Galej, X. C. Bai, C. Oubridge, S. H. W. Scheres, A. J. K. Nagai
Date :  15 Dec 15  (Deposition) - 27 Jan 16  (Release) - 02 Mar 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A,B,E,V,k,l,m,n,p,q,r
Keywords :  Transcription, Pre-Mrna Splicing, Snrnp, Gtpase, Spliceosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. H. Nguyen, W. P. Galej, X. C. Bai, C. Oubridge, A. J. Newman, S. H. Scheres, K. Nagai
Cryo-Em Structure Of The Yeast U4/U6. U5 Tri-Snrnp At 3. 7 Angstrom Resolution.
Nature V. 530 298 2016
PubMed-ID: 26829225  |  Reference-DOI: 10.1038/NATURE16940
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B
    Chains: k
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMB PROTEIN FROM THE U4 SNRNP SM PROTEIN RING. THE C-TERMINUS IS DISORDERED IN THIS AND OTHER PREVIOUSLY REPORTED STRUCTURES.
    Strain: BCY123
    Synonym: SNRNP-B,SM PROTEIN B,SMB
 
Molecule 2 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1
    Chains: l
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMD1 PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SM-D1,SNRNP CORE PROTEIN D1
 
Molecule 3 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
    Chains: m
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMD2 PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SM-D2,SNRNP CORE PROTEIN D2
 
Molecule 4 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
    Chains: n
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMD3 PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SM-D3,SNRNP CORE PROTEIN D3, U4 SMD3
 
Molecule 5 - SMALL NUCLEAR RIBONUCLEOPROTEIN E
    Chains: p
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SME PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SNRNP-E,SM PROTEIN E,SME
 
Molecule 6 - SMALL NUCLEAR RIBONUCLEOPROTEIN F
    Chains: q
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMF PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SNRNP-F,SM PROTEIN F, U4 SMF
 
Molecule 7 - SMALL NUCLEAR RIBONUCLEOPROTEIN G
    Chains: r
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SMG PROTEIN FROM THE U4 SNRNP SM PROTEIN RING.
    Strain: BCY123
    Synonym: SNRNP-G,SM PROTEIN G, U4 SMG
 
Molecule 8 - SNU66
    Chains: E
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: NB: SNU66 PROTEIN HAS BEEN MOSTLY FITTED AS POLY(ALA) INTO HELICES AND EXTENDED POLYPEPTIDE WITHIN THE EM MAP. THE AUTHORS DO NOT BELIEVE THE NUMBERING TO BE ACCURATE AND IT IS LIKELY INCORRECT.
    Strain: BCY123
 
Molecule 9 - PRE-MRNA-SPLICING HELICASE BRR2
    Chains: B
    EC Number: 3.6.4.13
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: BRR2 RNA HELICASE LOADED ONTO U4 SNRNA STRAND OF THE U4/U6 DUPLEX BETWEEN STEM 1 DUPLEX AND THE 3' STEM LOOP.
    Strain: BCY123
    Synonym: PROTEIN SNU246, BRR2 RNA HELICASE
 
Molecule 10 - SACCHAROMYCES CEREVISIAE STRAIN UOA_M2 CHROMOSOME 5 SEQUENCE
    Chains: V
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THIS U4 SNRNA REGION HAS A DISORDERED REGION BETWEEN STEM 1 OF THE U4/U6 SNRNA DUPLEX AND WHERE THE RNA IS LOADED INTO BRR2 PROTEIN. THE APICAL PART OF THE 3' STEM LOOP AND THE REGION FOLLOWING THE SM SITE ARE ALSO DISORDERED.
    Strain: BCY123
 
Molecule 11 - PRE-MRNA-SPLICING FACTOR 8
    Chains: A
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: PRP8 JAB1/MPN DOMAIN IS CONNECTED TO THE REST OF THE PRP8 PROTEIN BY A FLEXIBLE LINKER PEPTIDE.
    Strain: BCY123
    Synonym: PRP8 JAB1/MPN DOMAIN

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit : ABEVklmnpqr

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GAO)

(-) Sites  (0, 0)

(no "Site" information available for 5GAO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GAO)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ala n:81 -Pro n:82
2Leu B:448 -Pro B:449
3Ser B:1370 -Gly B:1371
4Thr B:1625 -Asp B:1626
5Thr A:2332 -Phe A:2333

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GAO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GAO)

(-) Exons   (0, 0)

(no "Exon" information available for 5GAO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhee............eeeeehhhhhhhhhhh........eeeee........eeeeeee...eeee..eeee...............eeeee.eee.......hhhhhhhhhhhh........eeeeeee..eeeeeee..hhhhhhhhhhhh..hhhhhhhhh.......eeeee.....eeeee.....................eee...........hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gao A 2147 SSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGD 2401
                                  2156      2166      2176      2186      2196      2206      2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326      2336      2346      2356      2366      2376      2386      2396     


Chain B from PDB  Type:PROTEIN  Length:1710
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........................ee....................hhhhhh...........hhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh..............eeeee..hhhhhhhhhhhhhhhh......eee.........hhhhhh.eeeehhhhhhhhhhh..hhhhhhheeeeee.hhhhhhh..hhhhhhhhhhhhhh........eeeeee....hhhhhhhhh......eee.hhhhh...ee.ee......hhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh......hhhhhhhh..ee....hhhhhhhhhhhhhh....eeee.hhhhhh......eeee.....ee....ee...hhhhhhhhhh..........eee....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhh..ee........eehhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhh..hhhhhhhh.hhhhhhhh.....hhhhhhhh.........eeeee......eeeeeee..............eeeeeeee......eeeeeeeee........eeeeeee..hhhhhhh...eeeeee.........eeeeee..............................hhhhhh.....hhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhh.eee.hhhhhhhhhh....hhhhhh..eeee.........hhhhhhhhhhhhhhhhhh......eeeee......hhhhhhhh..hhhhh...hhhhh...eeeeeeee........hhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhh....hhhhhhhhh...eee....hhhhhhhhhhhhhh.....eeee.hhhhh.....eeeee....ee....ee...hhhhhhhhhhh........eeeeeeeehhhhhhhhhhh........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh....eeee....eeeehhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..............hhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...eeeeee..........ee.eeeeee........ee........ee..eeeeeee....eeeeeeee.....eeeee..ee....eeeeeeeeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5gao B  439 KLMTVTKVSLPEGSFKRVKPQYDEIHIPAPSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENWWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEWDMLNVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCSAFACKTDEVIILGTNLYDGAEHKYMPYTINELLEMVGLASGNDSMAGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLVESSFIEIDDTTEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFEINVK 2163
                                   448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248      1258      1268      1278      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398      1408      1418      1428      1438      1448      1458      1468      1478      1488      1498      1508      1518      1528      1538      1548      1558      1568      1578      1588      1598      1608      1618      1628      1638      1648      1658      1668      1678      1688      1698      1708      1718      1728      1738      1748      1758      1768      1778      1788      1798      1808      1818      1843      1853      1863      1873      1883      1893      1903      1913      1923      1933      1943      1953      1963      1973      1983      1993      2003      2013      2023      2033      2043      2053      2063      2073      2083      2093      2103      2113      2123      2133      2143      2153      2163
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   1825|                                                                                                                                                                                                                                                                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    1841                                                                                                                                                                                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:338
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.................................hhhhh..............hhhhhhh...........hhhhhh........hhhhhhh.........hhhhhh.....hhhhh..............hhhhh..............................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....................hhhhhh.hhhhhhhhh..............................hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gao E    5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKSNKK  560
                                    14        24||      48        70        82        96     ||123       150       160       170|      189    || 214       224 ||    247  ||   276   ||  295   ||  315  ||   336       346       356       366       376       386       396       406       416   ||  492       502       512       522       532       542       552        
                                               25|               57|       79|       91|   102|         132|                 170|           194|             226|       250|       280|      299|     318|                                                                                       420|                                                                         
                                                40                70        82        96    120          150                  180            210              240        270        290       310      330                                                                                        487                                                                         


Chain V from PDB  Type:RNA  Length:57
                                                                                          
                5gao V   73 AUUAUAAACCAGACCGUCUCCUCAUGGUCAAUCAAGACUAUGUAGGGAAUUUUUGGA  152
                                    82        92       102 ||    135       145       
                                                         104|                        
                                                          128                        


Chain k from PDB  Type:PROTEIN  Length:80
                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeeee.....eeeeeee.......ee...................eeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                5gao k    4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKIKVEKRVLGLTILRGEQILSTVVEDKPL  102
                                    13        23        33        43        53 ||     82        92       102
                                                                              55|                           
                                                                               75                           


Chain l from PDB  Type:PROTEIN  Length:91
                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh...eee.ee......eee..........ee.................eee....eee...........hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                5gao l    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPSDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRR  118
                                    10        20        30        40       |77        87        97       107       117 
                                                                          48|                                          
                                                                           76                                          


Chain m from PDB  Type:PROTEIN  Length:94
                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhh.hhhhhhhhhh..eeeee.....eeeeeeee.......eeeeeeeeee........eeeeee...........eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                5gao m   15 RAELEELEEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVINRERFISKLFLRGDSVIVVLKTP  108
                                    24        34        44        54        64        74        84        94       104    


Chain n from PDB  Type:PROTEIN  Length:82
                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eeeeee....eeeee.........eeee..eee......ee..eeee....eeeeee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                5gao n    4 NGIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFK   85
                                    13        23        33        43        53        63        73        83  


Chain p from PDB  Type:PROTEIN  Length:76
                                                                                                             
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeee........eeeeeeeeee...........eee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                5gao p   10 MVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSAKGTPLGKILLKGDNITLITS   92
                                    19        29        39        49        59     || 76        86      
                                                                                  65|                   
                                                                                   73                   


Chain q from PDB  Type:PROTEIN  Length:72
                                                                                                         
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh...eeeeee.....eeeeee........eeeeeeeeee..eeeeeeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                5gao q   12 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRE   83
                                    21        31        41        51        61        71        81  


Chain r from PDB  Type:PROTEIN  Length:69
                                                                                                      
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.......eeeeee.......ee...ee...ee....ee.hhhhh.eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                5gao r    2 VSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINNHQLGLQTVIRGNSIISLEALDA   76
                                    11        21        31        41    ||  57        67         
                                                                       46|                       
                                                                        53
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GAO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GAO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GAO)

(-) Gene Ontology  (48, 175)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5gao)
 
  Cis Peptide Bonds
    Ala n:81 - Pro n:82   [ RasMol ]  
    Leu B:448 - Pro B:449   [ RasMol ]  
    Ser B:1370 - Gly B:1371   [ RasMol ]  
    Thr A:2332 - Phe A:2333   [ RasMol ]  
    Thr B:1625 - Asp B:1626   [ RasMol ]  
 

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  5gao
    Family and Domain Information: ProDom | SYSTERS
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  BRR2_YEAST | P32639
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  PRP8_YEAST | P33334
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  RSMB_YEAST | P40018
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    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  RUXE_YEAST | Q12330
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  RUXF_YEAST | P54999
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  RUXG_YEAST | P40204
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  SMD1_YEAST | Q02260
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  SMD2_YEAST | Q06217
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  SMD3_YEAST | P43321
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  SNU66_YEAST | Q12420
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  3.6.4.13
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  BRR2_YEAST | P32639
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  PRP8_YEAST | P33334
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  RSMB_YEAST | P40018
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  RUXE_YEAST | Q12330
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  RUXF_YEAST | P54999
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  RUXG_YEAST | P40204
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  SMD1_YEAST | Q02260
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SMD2_YEAST | Q06217
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  SMD3_YEAST | P43321
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SNU66_YEAST | Q12420
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRR2_YEAST | P32639: 3hib 3im1 3im2 3jcm 4bgd 5dca 5gan 5gap 5gm6 5lj5 5lqw 5m52 5m5p
        PRP8_YEAST | P33334: 2og4 3e66 3e9o 3e9p 3jcm 3sbg 3sbt 3zef 4bgd 4i43 4ilg 4ilh 4ilj 5dca 5gam 5gan 5gap 5gm6 5gmk 5lj3 5lj5 5lqw 5m52 5m5p 5mps 5mq0 5wsg
        RSMB_YEAST | P40018: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        RUXE_YEAST | Q12330: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        RUXF_YEAST | P54999: 1n9r 1n9s 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        RUXG_YEAST | P40204: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        SMD1_YEAST | Q02260: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        SMD2_YEAST | Q06217: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        SMD3_YEAST | P43321: 3jcm 5gam 5gan 5gm6 5gmk 5lj3 5lj5 5lqw 5mps 5mq0 5wsg
        SNU66_YEAST | Q12420: 3plu 3plv 5gan

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GAO)