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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR TM1030 WITH OCTANOL
 
Authors :  K. D. Koclega, M. Chruszcz, D. R. Cooper, J. J. Petkowski, K. L. Tkaczuk, A. Joachimiak, W. Minor, Midwest Center For Structural Genomics
Date :  30 Nov 12  (Deposition) - 02 Jan 13  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Pfam Tetr_n, Helix-Turn-Helix, Transcriptional Regulator, Dna Binding, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. D. Koclega, M. Chruszcz, D. R. Cooper, J. J. Petkowski, K. L. Tkaczuk A. Joachimiak, W. Minor
Crystal Structure Of Transcriptional Regulator Tm1030 With Octanol
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, TETR FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21-GOLD (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TM1030, TM_1030
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE15Mod. Amino AcidSELENOMETHIONINE
3OC92Ligand/IonOCTAN-1-OL
Biological Unit 1 (3, 22)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE14Mod. Amino AcidSELENOMETHIONINE
3OC94Ligand/IonOCTAN-1-OL
Biological Unit 2 (2, 18)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE16Mod. Amino AcidSELENOMETHIONINE
3OC9-1Ligand/IonOCTAN-1-OL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:90 , PHE A:161 , VAL A:164 , TYR A:165 , GLU A:186 , OC9 A:302 , HOH A:511BINDING SITE FOR RESIDUE OC9 A 301
2AC2SOFTWARETRP A:156 , PHE A:157 , PHE A:158 , PHE A:161 , OC9 A:301 , HOH A:506BINDING SITE FOR RESIDUE OC9 A 302
3AC3SOFTWAREVAL A:109 , GLU A:111 , LYS A:200BINDING SITE FOR RESIDUE EDO A 303
4AC4SOFTWAREALA A:142 , GLU A:143 , ARG A:192 , LYS A:196 , GLY A:197BINDING SITE FOR RESIDUE EDO A 304
5AC5SOFTWARESER B:57 , VAL B:58 , LYS B:61BINDING SITE FOR RESIDUE EDO B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I76)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I76)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I76)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I76)

(-) Exons   (0, 0)

(no "Exon" information available for 4I76)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4i76a1 A:3-75 Transcriptional regulator TM1030                          d4i76a2 A:76-200 Transcriptional regulator TM1030                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i76 A   3 SKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYmSVTEKLQKEFENFLmKNRNRDIFDFmERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLmWFFSGFEEVYLRTYQGKPELLKRDmNTLVEEVKVmLRILKKGmTK 200
                                    12        22        32        42        52   |    62        72        82        92       102       112       122       132       142       152  |    162       172       182       192     |  
                                                                                56-MSE         71-MSE     82-MSE                                                                  155-MSE                  180-MSE   190-MSE 198-MSE


Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains d4i76b1 B:1-75 Transcriptional regulator TM1030                            d4i76b2 B:76-200 Transcriptional regulator TM1030                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i76 B   1 mLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYmSVTEKLQKEFENFLmKNRNRDIFDFmERWIEKKLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLmWFFSGFEEVYLRTYQGKPELLKRDmNTLVEEVKVmLRILKKGmTK 200
                            |       10        20        30        40        50     |  60        70|       80 |      90       100       110       120       130       140       150    |  160       170       180       190       200
                            |                                                     56-MSE         71-MSE     82-MSE                                                                  155-MSE                  180-MSE   190-MSE 198-MSE
                            1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I76)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I76)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9X0C0_THEMA | Q9X0C0: 1z77 1zkg 2id6 2iek 3ih2 3ih3 3ih4 4i6z

(-) Related Entries Specified in the PDB File

2id6
2iek
4i6z RELATED ID: MCSG-APC106687 RELATED DB: TARGETTRACK