4HWL - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE ANALYSIS OF THE BACTERIORHODOPSIN IN FACIAL AMPHIPHILE-7 DMPC BICELLE

Authors :   S. Lee, C. D. Stout, Q. Zhang

Date :   08 Nov 12 (Deposition) - 20 Mar 13 (Release) - 22 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   Facial Amphiphile-7 Dmpc Bicelle, Alpha Helical 7 Transmembrane Protein, Photoreceptor, Proton Pump, Retinal Binding, Transmembrane, Proton Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. C. Lee, B. C. Bennett, W. X. Hong, Y. Fu, K. A. Baker, J. Marcoux, C. V. Robinson, A. B. Ward, J. R. Halpert, R. C. Stevens, C. D. Stout, M. J. Yeager, Q. Zhang
Steroid-Based Facial Amphiphiles For Stabilization And Crystallization Of Membrane Proteins.
Proc. Natl. Acad. Sci. Usa V. 110 E1203 2013
PubMed-ID: 23479627 | Reference-DOI: 10.1073/PNAS.1221442110

Molecule 1 - BACTERIORHODOPSIN
	Chains	:	A, B
	Organism Scientific	:	HALOBACTERIUM SALINARUM
	Organism Taxid	:	2242
	Strain	:	S9
	Synonym	:	BR, BACTERIOOPSIN, BO

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	HEX	4	Ligand/Ion	HEXANE
3	HP6	3	Ligand/Ion	HEPTANE
4	RET	2	Ligand/Ion	RETINAL

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	HEX	2	Ligand/Ion	HEXANE
3	HP6	3	Ligand/Ion	HEPTANE
4	RET	1	Ligand/Ion	RETINAL

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	HEX	2	Ligand/Ion	HEXANE
3	HP6	-1	Ligand/Ion	HEPTANE
4	RET	1	Ligand/Ion	RETINAL

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	HEX	2	Ligand/Ion	HEXANE
3	HP6	3	Ligand/Ion	HEPTANE
4	RET	1	Ligand/Ion	RETINAL

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:86 , THR A:90 , TRP A:138 , SER A:141 , THR A:142 , TRP A:182 , TYR A:185 , TRP A:189 , ASP A:212 , ALA A:215 , LYS A:216	BINDING SITE FOR RESIDUE RET A 301
2	AC2	SOFTWARE	GLY A:106 , LEU A:109	BINDING SITE FOR RESIDUE HEX A 302
3	AC3	SOFTWARE	SER A:183 , MET B:145 , SER B:183 , PRO B:186	BINDING SITE FOR RESIDUE HP6 A 303
4	AC4	SOFTWARE	ASN A:176	BINDING SITE FOR RESIDUE HP6 A 304
5	AC5	SOFTWARE	PHE B:135	BINDING SITE FOR RESIDUE HP6 A 305
6	AC6	SOFTWARE	TRP B:86 , THR B:90 , TRP B:138 , SER B:141 , THR B:142 , TRP B:182 , TYR B:185 , TRP B:189 , ASP B:212 , ALA B:215 , LYS B:216	BINDING SITE FOR RESIDUE RET B 301
7	AC7	SOFTWARE	GLY B:72 , GLU B:74 , ASN B:76	BINDING SITE FOR RESIDUE GOL B 302
8	AC8	SOFTWARE	LEU B:206	BINDING SITE FOR RESIDUE HEX B 303
9	AC9	SOFTWARE	LEU A:190	BINDING SITE FOR RESIDUE HEX B 304

(no "SS Bond" information available for 4HWL)

(no "Cis Peptide Bond" information available for 4HWL)

(no "SAP(SNP)/Variant" information available for 4HWL)

(no "PROSITE Motif" information available for 4HWL)

(no "Exon" information available for 4HWL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains d4hwla_ A: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hwl A   5 TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 231
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains d4hwlb_ B: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hwl B   5 TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 231
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Membrane and cell surface proteins and peptides (2046)

Fold: Family A G protein-coupled receptor-like (138)

Superfamily: Family A G protein-coupled receptor-like (138)

Family: Bacteriorhodopsin-like (107)

Protein domain: automated matches (33)

Halobacterium salinarum [TaxId: 2242] (21)

1a	d4hwla_	A:
1b	d4hwlb_	B:

(no "CATH Domain" information available for 4HWL)

(no "Pfam Domain" information available for 4HWL)

Asymmetric Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 4hwl)

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	4hwl
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		Orientation in Membranes	:	OPM
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Description

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Ligands, Modified Residues, Ions (4, 10)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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