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(-) Description

Title :  PRODUCT COMPLEXES OF PORCINE LIVER FRUCTOSE-1,6-BISPHOSPHATASE WITH MUTATION R22M REVEAL A T-STATE CONFORMATION
 
Authors :  Y. Gao, R. B. Honzatko
Date :  03 Sep 12  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Allosteric Enzymes, Cooperativity, Oligomerization, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Gao, R. B. Honzatko
Dimer-Dimer Interface In Porcine Liver Fructose-1, 6-Bisphosphatase Is Essential In Cooperative Binding Of Amp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE 1
    Chains: A, B
    EC Number: 3.1.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Strain: DF657
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FBP, FBP1
    Mutation: YES
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1F6P2Ligand/IonFRUCTOSE-6-PHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1F6P4Ligand/IonFRUCTOSE-6-PHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PO48Ligand/IonPHOSPHATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:121 , GLY A:122 , ASN A:212 , TYR A:215 , TYR A:244 , GLY A:246 , MET A:248 , TYR A:264 , LYS A:274 , GLU A:280 , MG A:402 , PO4 A:405 , HOH A:520 , HOH A:541 , HOH A:548 , HOH A:565 , HOH A:613 , ARG B:243BINDING SITE FOR RESIDUE F6P A 401
02AC2SOFTWAREGLU A:97 , ASP A:118 , ASP A:121 , GLU A:280 , F6P A:401 , PO4 A:405BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREGLU A:97 , GLU A:98 , ASP A:118 , LEU A:120 , PO4 A:405BINDING SITE FOR RESIDUE MG A 403
04AC4SOFTWAREGLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , LYS A:112 , TYR A:113BINDING SITE FOR RESIDUE PO4 A 404
05AC5SOFTWAREGLU A:97 , ASP A:118 , LEU A:120 , ASP A:121 , GLY A:122 , SER A:123 , GLU A:280 , F6P A:401 , MG A:402 , MG A:403BINDING SITE FOR RESIDUE PO4 A 405
06AC6SOFTWAREARG A:243 , ASP B:121 , GLY B:122 , ASN B:212 , TYR B:215 , TYR B:244 , GLY B:246 , SER B:247 , MET B:248 , TYR B:264 , LYS B:274 , GLU B:280 , MG B:402 , PO4 B:405 , HOH B:514 , HOH B:549 , HOH B:587 , HOH B:595 , HOH B:622BINDING SITE FOR RESIDUE F6P B 401
07AC7SOFTWAREGLU B:97 , ASP B:118 , ASP B:121 , GLU B:280 , F6P B:401 , PO4 B:405BINDING SITE FOR RESIDUE MG B 402
08AC8SOFTWAREASP B:74 , GLU B:97 , GLU B:98 , ASP B:118 , LEU B:120 , PO4 B:405BINDING SITE FOR RESIDUE MG B 403
09AC9SOFTWAREGLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , MET B:30 , LYS B:112 , TYR B:113BINDING SITE FOR RESIDUE PO4 B 404
10BC1SOFTWAREGLU B:97 , ASP B:118 , LEU B:120 , ASP B:121 , GLY B:122 , SER B:123 , GLU B:280 , F6P B:401 , MG B:402 , MG B:403 , HOH B:509BINDING SITE FOR RESIDUE PO4 B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GX3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GX3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GX3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GX3)

(-) Exons   (0, 0)

(no "Exon" information available for 4GX3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4gx3a_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhh..eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhh.eeeeeeeee...eeeeeee..eeeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gx3 A   9 NIVTLTRFVMEEGMKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHA 335
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       


Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4gx3b_ B: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhh..eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeee......eeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gx3 B   9 NIVTLTRFVMEEGMKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHA 335
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GX3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GX3)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        F16P1_PIG | P00636: 1cnq 1eyi 1eyj 1eyk 1fbc 1fbd 1fbe 1fbf 1fbg 1fbh 1fbp 1fj6 1fj9 1fpb 1fpd 1fpe 1fpf 1fpg 1fpi 1fpj 1fpk 1fpl 1frp 1fsa 1kz8 1lev 1nuw 1nux 1nuy 1nuz 1nv0 1nv1 1nv2 1nv3 1nv4 1nv5 1nv6 1nv7 1q9d 1rdx 1rdy 1rdz 1yxi 1yyz 1yz0 2f3b 2f3d 2fbp 2qvu 2qvv 3fbp 4fbp 4gbv 4gbw 4gws 4gwu 4gww 4gwx 4gwy 4gwz 4gx4 4gx6 4h45 4h46 4kxp 5fbp

(-) Related Entries Specified in the PDB File

4gws 4gwu 4gww 4gwx 4gwy 4gwz 4gx4 4gx6