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(-) Description

Title :  T-STATE STRUCTURE OF THE ARG 243 TO ALA MUTANT OF PIG KIDNEY FRUCTOSE 1,6-BISPHOSPHATASE EXPRESSED IN E. COLI
 
Authors :  B. Stec, R. Abraham, E. Giroux, E. R. Kantrowitz
Date :  17 May 96  (Deposition) - 11 Jan 97  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hydrolase R243A Mutant In The T-State, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Stec, R. Abraham, E. Giroux, E. R. Kantrowitz
Crystal Structures Of The Active Site Mutant (Arg-243-->Ala In The T And R Allosteric States Of Pig Kidney Fructose-1, 6-Bisphosphatase Expressed In Escherichia Coli.
Protein Sci. V. 5 1541 1996
PubMed-ID: 8844845
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOSE 1,6-BISPHOSPHATASE
    ChainsA, B
    EC Number3.1.3.11
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPEK220
    Expression System StrainEK1601
    Expression System Taxid562
    GeneCDNA
    MutationYES
    OrganKIDNEY
    Organism CommonPIG
    Organism ScientificSUS SCROFA
    Organism Taxid9823

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2F6P2Ligand/IonFRUCTOSE-6-PHOSPHATE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2F6P4Ligand/IonFRUCTOSE-6-PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:121 , ASN A:212 , TYR A:215 , TYR A:244 , GLY A:246 , SER A:247 , MET A:248 , TYR A:264 , LYS A:274 , LEU A:275 , ARG A:276 , GLU A:280BINDING SITE FOR RESIDUE F6P A 338
2AC2SOFTWAREASP B:121 , ASN B:212 , TYR B:215 , TYR B:244 , GLY B:246 , SER B:247 , MET B:248 , TYR B:264 , LYS B:274 , LEU B:275 , GLU B:280 , HOH B:361 , HOH B:416BINDING SITE FOR RESIDUE F6P B 338
3AC3SOFTWAREVAL A:17 , GLN A:20 , GLY A:21 , ALA A:24 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , THR A:31 , LYS A:112 , TYR A:113 , ARG A:140 , VAL A:160BINDING SITE FOR RESIDUE AMP A 339
4AC4SOFTWAREVAL B:17 , GLN B:20 , GLY B:21 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , MET B:30 , THR B:31 , LYS B:112 , TYR B:113 , ARG B:140 , MET B:177BINDING SITE FOR RESIDUE AMP B 339

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RDZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RDZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RDZ)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FBPASEPS00124 Fructose-1-6-bisphosphatase active site.F16P1_PIG274-286
 
  2A:273-285
B:273-285
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FBPASEPS00124 Fructose-1-6-bisphosphatase active site.F16P1_PIG274-286
 
  4A:273-285
B:273-285

(-) Exons   (0, 0)

(no "Exon" information available for 1RDZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:337
 aligned with F16P1_PIG | P00636 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
            F16P1_PIG     2 TDQAAFDTNIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 338
               SCOP domains d1rdza_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------1rdzA01 A:7-199 Fructose-1,6-Bisphosphatase, subunit A, domain 1                                                                                                                                 1rdzA02 A:200-334  [code=3.40.190.80, no name defined]                                                                                 --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh....hhhh................hhhhhhhhhhhhhhhh....eeee................eeeeee....hhhhhh...eeeeeeeee........hhhh...hhheeeeeeeee...eeeeeee..eeeeeeee....eeeeeee..............hhhhhh..hhhhhhhhhhh................hhhhhhhhhhh..eeee................hhhhhhhhhh...eee.....hhh...........eeee.hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ---------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rdz A   1 TDQAAFDTNIVTLTRFVMEQGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVTEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRNVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGAAYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       

Chain B from PDB  Type:PROTEIN  Length:337
 aligned with F16P1_PIG | P00636 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
            F16P1_PIG     2 TDQAAFDTNIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 338
               SCOP domains d1rdzb_ B: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------1rdzB01 B:7-199 Fructose-1,6-Bisphosphatase, subunit A, domain 1                                                                                                                                 1rdzB02 B:200-334  [code=3.40.190.80, no name defined]                                                                                 --- CATH domains
           Pfam domains (1) ----------FBPase-1rdzB01 B:11-334                                                                                                                                                                                                                                                                                                             --- Pfam domains (1)
           Pfam domains (2) ----------FBPase-1rdzB02 B:11-334                                                                                                                                                                                                                                                                                                             --- Pfam domains (2)
         Sec.struct. author ............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh....hhhhh...............hhhhhhhhhhhhhhhh....eeee..........hhh...eeeeee....hhhhhh...eeeeeeeee........hhhh...hhheeeeeeeee...eeeeeee..eeeeeeee....eeeeee...............hhhhhh..hhhhhhhhhhh................hhhhhhhhhhh..eeee................hhhhhhhhhh...eee...................eeee.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ---------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rdz B   1 TDQAAFDTNIVTLTRFVMEQGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVTEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRNVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGAAYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (F16P1_PIG | P00636)
molecular function
    GO:0016208    AMP binding    Interacting selectively and non-covalently with AMP, adenosine monophosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0042132    fructose 1,6-bisphosphate 1-phosphatase activity    Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0048029    monosaccharide binding    Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
    GO:0042578    phosphoric ester hydrolase activity    Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0035690    cellular response to drug    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0071286    cellular response to magnesium ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0006002    fructose 6-phosphate metabolic process    The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0046580    negative regulation of Ras protein signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction.
    GO:0030308    negative regulation of cell growth    Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.
    GO:0045820    negative regulation of glycolytic process    Any process that stops, prevents, or reduces the frequency, rate or extent of glycolysis.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0006111    regulation of gluconeogenesis    Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F16P1_PIG | P006361cnq 1eyi 1eyj 1eyk 1fbc 1fbd 1fbe 1fbf 1fbg 1fbh 1fbp 1fj6 1fj9 1fpb 1fpd 1fpe 1fpf 1fpg 1fpi 1fpj 1fpk 1fpl 1frp 1fsa 1kz8 1lev 1nuw 1nux 1nuy 1nuz 1nv0 1nv1 1nv2 1nv3 1nv4 1nv5 1nv6 1nv7 1q9d 1rdx 1rdy 1yxi 1yyz 1yz0 2f3b 2f3d 2fbp 2qvu 2qvv 3fbp 4fbp 4gbv 4gbw 4gws 4gwu 4gww 4gwx 4gwy 4gwz 4gx3 4gx4 4gx6 4h45 4h46 4kxp 5fbp

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