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(-) Description

Title :  CRYSTAL STRUCTURE OF AMP COMPLEXES OF NEM MODIFIED PORCINE LIVER FRUCTOSE-1,6-BISPHOSPHATASE
 
Authors :  Y. Gao, R. B. Honzatko
Date :  16 Sep 12  (Deposition) - 18 Sep 13  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Allosteric Enzymes, Fbpase, Nem Modification, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Gao, R. B. Honzatko
Fluorescent 2', 3'-O-(2, 4, 6-Trinitrophenyl) (Tnp)-Amp Is An Active Site Inhibitor For Porcine Liver Fructose-1, 6-Bisphosphatase Rather Than Allosteric Inhibito
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE 1
    Chains: A
    EC Number: 3.1.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Strain: DF657
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FBP, FBP1
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2F6P1Ligand/IonFRUCTOSE-6-PHOSPHATE
3MG1Ligand/IonMAGNESIUM ION
4NEN1Ligand/Ion1-ETHYL-PYRROLIDINE-2,5-DIONE
5PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 16)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2F6P4Ligand/IonFRUCTOSE-6-PHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4NEN4Ligand/Ion1-ETHYL-PYRROLIDINE-2,5-DIONE
5PO44Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:121 , GLY A:122 , ASN A:212 , TYR A:215 , ARG A:243 , TYR A:244 , GLY A:246 , MET A:248 , TYR A:264 , LYS A:274 , GLU A:280 , MG A:402 , PO4 A:403 , HOH A:516 , HOH A:554 , HOH A:569BINDING SITE FOR RESIDUE F6P A 401
2AC2SOFTWAREGLU A:97 , ASP A:118 , ASP A:121 , GLU A:280 , F6P A:401 , PO4 A:403BINDING SITE FOR RESIDUE MG A 402
3AC3SOFTWAREGLU A:97 , ASP A:118 , LEU A:120 , ASP A:121 , GLY A:122 , GLU A:280 , F6P A:401 , MG A:402BINDING SITE FOR RESIDUE PO4 A 403
4AC4SOFTWAREVAL A:17 , GLU A:20 , GLY A:21 , ALA A:24 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , THR A:31 , LYS A:112 , TYR A:113 , MET A:177 , HOH A:524 , HOH A:578BINDING SITE FOR RESIDUE AMP A 404
5AC5SOFTWARESER A:124 , ASN A:125 , ASP A:127 , CYS A:128 , VAL A:130 , ILE A:208 , ARG A:243 , TYR A:258 , HOH A:510BINDING SITE FOR RESIDUE NEN A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H46)

(-) Exons   (0, 0)

(no "Exon" information available for 4H46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4h46a_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhh..eeeeee......ee.hhhhh..eeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeeee....eeeeee..........eee.hhhhh...hhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h46 A   9 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHA 335
                                    18        28        38        48        58   ||   76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
                                                                                62|                                                                                                                                                                                                                                                                        
                                                                                 71
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H46)

(-) Gene Ontology  (21, 21)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F16P1_PIG | P00636: 1cnq 1eyi 1eyj 1eyk 1fbc 1fbd 1fbe 1fbf 1fbg 1fbh 1fbp 1fj6 1fj9 1fpb 1fpd 1fpe 1fpf 1fpg 1fpi 1fpj 1fpk 1fpl 1frp 1fsa 1kz8 1lev 1nuw 1nux 1nuy 1nuz 1nv0 1nv1 1nv2 1nv3 1nv4 1nv5 1nv6 1nv7 1q9d 1rdx 1rdy 1rdz 1yxi 1yyz 1yz0 2f3b 2f3d 2fbp 2qvu 2qvv 3fbp 4fbp 4gbv 4gbw 4gws 4gwu 4gww 4gwx 4gwy 4gwz 4gx3 4gx4 4gx6 4h45 4kxp 5fbp

(-) Related Entries Specified in the PDB File

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