2QVU - JenaLib

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Title :   PORCINE LIVER FRUCTOSE-1,6-BISPHOSPHATASE COCRYSTALLIZED WITH FRU-2,6-P2 AND MG2+, I(T)-STATE

Authors :   J. K. Hines, X. Chen, J. C. Nix, H. J. Fromm, R. B. Honzatko

Date :   08 Aug 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Homotetramer; Sugar Phosphatase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. K. Hines, X. Chen, J. C. Nix, H. J. Fromm, R. B. Honzatko
Structures Of Mammalian And Bacterial Fructose-1, 6-Bisphosphatase Reveal The Basis For Synergism In Amp/Fructose 2, 6-Bisphosphate Inhibition
J. Biol. Chem. V. 282 36121 2007
PubMed-ID: 17933867 | Reference-DOI: 10.1074/JBC.M707302200

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE 1
	Chains	:	A, B
	EC Number	:	3.1.3.11
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-24B
	Expression System Strain	:	DF657
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 9-337
	Gene	:	FBP1, FBP
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823
	Other Details	:	LIVER ISOZYME
	Synonym	:	D-FRUCTOSE-1,6- BISPHOSPHATE 1-PHOSPHOHYDROLASE 1; FBPASE 1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	FDP	2	Ligand/Ion	FRUCTOSE-2,6-DIPHOSPHATE
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	FDP	4	Ligand/Ion	FRUCTOSE-2,6-DIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PO4	4	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:121 , GLY A:122 , SER A:123 , SER A:124 , ASN A:212 , TYR A:215 , TYR A:244 , GLY A:246 , SER A:247 , MET A:248 , TYR A:264 , LYS A:274 , ARG A:276 , GLU A:280 , MG A:340 , HOH A:356 , HOH A:367 , HOH A:404 , HOH A:438 , HOH A:459 , HOH A:488 , HOH A:687 , HOH A:700 , ARG B:243	BINDING SITE FOR RESIDUE FDP A 338
2	AC2	SOFTWARE	ARG A:243 , ASP B:121 , GLY B:122 , SER B:123 , SER B:124 , ASN B:212 , TYR B:215 , TYR B:244 , GLY B:246 , SER B:247 , MET B:248 , TYR B:264 , LYS B:274 , ARG B:276 , GLU B:280 , MG B:344 , HOH B:354 , HOH B:375 , HOH B:390 , HOH B:401 , HOH B:450 , HOH B:471 , HOH B:499 , HOH B:600 , HOH B:684	BINDING SITE FOR RESIDUE FDP B 339
3	AC3	SOFTWARE	GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , LYS A:112 , TYR A:113 , HOH A:633	BINDING SITE FOR RESIDUE PO4 A 342
4	AC4	SOFTWARE	GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , MET B:30 , LYS B:112 , TYR B:113 , ARG B:140 , HOH B:564	BINDING SITE FOR RESIDUE PO4 B 343
5	AC5	SOFTWARE	ASP A:118 , ASP A:121 , ARG A:276 , GLU A:280 , FDP A:338 , HOH A:700	BINDING SITE FOR RESIDUE MG A 340
6	AC6	SOFTWARE	GLU A:97 , HOH A:389 , HOH A:438 , HOH A:459 , HOH A:574 , HOH A:613	BINDING SITE FOR RESIDUE MG A 341
7	AC7	SOFTWARE	ASP B:118 , ASP B:121 , ARG B:276 , GLU B:280 , FDP B:339 , HOH B:600	BINDING SITE FOR RESIDUE MG B 344
8	AC8	SOFTWARE	GLU B:97 , HOH B:390 , HOH B:471 , HOH B:566 , HOH B:596 , HOH B:622	BINDING SITE FOR RESIDUE MG B 345

(no "SS Bond" information available for 2QVU)

(no "Cis Peptide Bond" information available for 2QVU)

(no "SAP(SNP)/Variant" information available for 2QVU)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_PIG	274-286	2	A:273-285 B:273-285

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_PIG	274-286	4	A:273-285 B:273-285

(no "Exon" information available for 2QVU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:329
 aligned with F16P1_PIG | P00636 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:329
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
            F16P1_PIG    10 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 338
               SCOP domains d2qvua_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2qvuA01 A:9-199 Fructose-1,6-Bisphosphatase, subunit A, domain 1                                                                                                                               2qvuA02 A:200-334  [code=3.40.190.80, no name defined]                                                                                 --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ---------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qvu A   9 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 337
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328

Chain B from PDB  Type:PROTEIN  Length:329
 aligned with F16P1_PIG | P00636 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:329
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
            F16P1_PIG    10 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 338
               SCOP domains d2qvub_ B: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2qvuB01 B:9-199 Fructose-1,6-Bisphosphatase, subunit A, domain 1                                                                                                                               2qvuB02 B:200-334  [code=3.40.190.80, no name defined]                                                                                 --- CATH domains
           Pfam domains (1) --FBPase-2qvuB01 B:11-334                                                                                                                                                                                                                                                                                                             --- Pfam domains (1)
           Pfam domains (2) --FBPase-2qvuB02 B:11-334                                                                                                                                                                                                                                                                                                             --- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       ---------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qvu B   9 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 337
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Carbohydrate phosphatase (140)

Superfamily: Carbohydrate phosphatase (140)

Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like (121)

Protein domain: Fructose-1,6-bisphosphatase (75)

Pig (Sus scrofa) [TaxId: 9823] (65)

1a	d2qvua_	A:
1b	d2qvub_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Fructose-1,6-Bisphosphatase; Chain A, domain 1 (114)

Homologous Superfamily: Fructose-1,6-Bisphosphatase, subunit A, domain 1 (114)

Pig (Sus scrofa) (54)

1a	2qvuA01	A:9-199
1b	2qvuB01	B:9-199

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: [code=3.40.190.80, no name defined] (109)

Pig (Sus scrofa) (54)

2a	2qvuA02	A:200-334
2b	2qvuB02	B:200-334

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Phospoesterase (42)

Family: FBPase (32)

Sus scrofa (Pig) (19)

1a	FBPase-2qvuB01	B:11-334
1b	FBPase-2qvuB02	B:11-334

Asymmetric Unit(hide GO term definitions)

Chain A,B (F16P1_PIG | P00636)

molecular function
	GO:0016208	AMP binding	Interacting selectively and non-covalently with AMP, adenosine monophosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0048029	monosaccharide binding	Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
	GO:0042578	phosphoric ester hydrolase activity	Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0035690	cellular response to drug	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0071286	cellular response to magnesium ion	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0006002	fructose 6-phosphate metabolic process	The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0046580	negative regulation of Ras protein signal transduction	Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction.
	GO:0030308	negative regulation of cell growth	Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.
	GO:0045820	negative regulation of glycolytic process	Any process that stops, prevents, or reduces the frequency, rate or extent of glycolysis.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0006111	regulation of gluconeogenesis	Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	2qvu
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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