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(-) Description

Title :  HUMAN MENIN WITH BOUND INHIBITOR MI-2-2
 
Authors :  A. Shi, M. J. Murai, S. He, G. L. Lund, T. Hartley, T. Purohit, G. Reddy, M. J. Grembecka, T. Cierpicki
Date :  22 Aug 12  (Deposition) - 19 Sep 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.27
Chains :  Asym./Biol. Unit :  A
Keywords :  Tumor Suppressor, Nucleus, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Shi, M. J. Murai, S. He, G. Lund, T. Hartley, T. Purohit, G. Reddy, M. Chruszcz, J. Grembecka, T. Cierpicki
Structural Insights Into Inhibition Of The Bivalent Menin-Mll Interaction By Small Molecules In Leukemia.
Blood V. 120 4461 2012
PubMed-ID: 22936661  |  Reference-DOI: 10.1182/BLOOD-2012-05-429274

(-) Compounds

Molecule 1 - MENIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MEN1, SCG2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 14)

Asymmetric/Biological Unit (6, 14)
No.NameCountTypeFull Name
10RT1Ligand/Ion4-[4-(5,5-DIMETHYL-4,5-DIHYDRO-1,3-THIAZOL-2-YL)PIPERAZIN-1-YL]-6-(2,2,2-TRIFLUOROETHYL)THIENO[2,3-D]PYRIMIDINE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4PE42Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5SO44Ligand/IonSULFATE ION
6UNX5Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:155 , LEU A:177 , SER A:178 , ASP A:180 , HIS A:181 , ALA A:182 , PHE A:238 , TYR A:276 , MET A:278 , ASN A:282 , TYR A:319 , MET A:322 , TYR A:323 , HOH A:823BINDING SITE FOR RESIDUE 0RT A 601
2AC2SOFTWAREVAL A:50 , ASN A:331 , ARG A:332 , ASN A:333 , VAL A:334 , ARG A:335 , GLY A:401 , ALA A:403 , HOH A:966 , HOH A:1050 , HOH A:1089BINDING SITE FOR RESIDUE EPE A 607
3AC3SOFTWAREARG A:14 , HOH A:1243BINDING SITE FOR RESIDUE SO4 A 608
4AC4SOFTWAREPHE A:47 , GLY A:386 , GLN A:400 , HOH A:835 , HOH A:904BINDING SITE FOR RESIDUE SO4 A 609
5AC5SOFTWARETYR A:133 , PHE A:134 , LYS A:151 , ARG A:332 , HOH A:1291BINDING SITE FOR RESIDUE SO4 A 610
6AC6SOFTWAREARG A:446 , HOH A:858BINDING SITE FOR RESIDUE SO4 A 611
7AC7SOFTWARELEU A:75 , THR A:76 , PHE A:365 , HOH A:728 , HOH A:913 , HOH A:965BINDING SITE FOR RESIDUE PE4 A 612
8AC8SOFTWARETRP A:126 , ASN A:127 , LEU A:129 , SER A:130 , LYS A:135 , TRP A:198BINDING SITE FOR RESIDUE PE4 A 613
9AC9SOFTWAREVAL A:185 , GLY A:190 , GLU A:191 , TYR A:227 , ARG A:229 , SER A:583BINDING SITE FOR RESIDUE DMS A 614

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQ4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:11 -Pro A:12
2Val A:460 -Pro A:461

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 4GQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhh..hhhhhhhhhhhhhhhh.....eeee....eeeeehhhhheee................hhhhhhh.hhhhhhhh.ee.hhhhhhhhhhhh...eee..eehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhh..eee.....eee..hhhhhhhhhhh.....hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gq4 A   2 GLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSVPGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMK 588
                                    11        21        31        41        51 ||     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381    || 403       413       423       433       443       453       549       559       569       579         
                                                                              53|                                                                                                                                                                                                                                                                                                                     386|                                                           461|                                        
                                                                               74                                                                                                                                                                                                                                                                                                                      399                                                            548
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQ4)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:11 - Pro A:12   [ RasMol ]  
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  4gq4
    Family and Domain Information: ProDom | SYSTERS
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  MEN1_HUMAN | O00255
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEN1_HUMAN | O00255: 3u84 3u85 3u86 3u88 4gpq 4gq3 4gq6 4i80 4og3 4og4 4og5 4og6 4og7 4og8 4x5y 4x5z 5db0 5db1 5db2 5db3 5dd9 5dda 5ddb 5ddc 5ddd 5dde 5ddf

(-) Related Entries Specified in the PDB File

4gpq 4gq3 4gq6