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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK2
 
Authors :  Y. N. Kang, J. A. Stuckey, X. Xie
Date :  28 Jun 12  (Deposition) - 22 Aug 12  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. N. Kang, J. A. Stuckey, X. Xie
Crystal Structure Of The Erk2 Complexed With Ek2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ERK2, MAPK1, PRKM1, PRKM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: HUMAN
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CME3Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3EK21Ligand/Ion{4-[4-(3,5-DICHLOROPHENYL)-1H-PYRAZOL-5-YL]-1H-PYRROL-2-YL}(MORPHOLIN-4-YL)METHANONE
4SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:37 , ALA A:50 , ILE A:51 , LYS A:52 , ILE A:101 , GLN A:103 , LEU A:105 , MET A:106 , THR A:108 , ASP A:109 , LYS A:112 , CME A:164 , HOH A:684 , HOH A:694BINDING SITE FOR RESIDUE EK2 A 401
2AC2SOFTWAREARG A:189 , ARG A:192 , TYR A:231 , HOH A:585 , HOH A:633BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWARELYS A:205 , HOH A:538 , HOH A:686BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWARELYS A:112 , LYS A:257BINDING SITE FOR RESIDUE EDO A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FUY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FUY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FUY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FUY)

(-) Exons   (0, 0)

(no "Exon" information available for 4FUY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4fuya_ A: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeee....eeeeeee....eeeeeeee..hhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh..........hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fuy A   9 PEMVVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKIcDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNcIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFPKEKLKELIFEETARFQPGY 356
                               ||   21        31        41        51   ||   67        77        87        97       107       117       127       137       147       157 |    |167       177       187       197       207       217       227       237       247    |  257       267       277       287       297       307       317       327 ||    344       354  
                              12|                                     55|                                                                                              159-CME|                                                                                     252-CME                                                                      329|                   
                               16                                      62                                                                                                   164-CME                                                                                                                                                               337
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FUY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FUY)

(-) Gene Ontology  (107, 107)

Asymmetric/Biological Unit(hide GO term definitions)

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  MK01_HUMAN | P28482
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fv0 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4n0s 4nif 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzn 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhf 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

(-) Related Entries Specified in the PDB File

4fux CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E75
4fv0 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK3
4fv1 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK4
4fv2 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK5
4fv3 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK6
4fv4 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK7
4fv5 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK9
4fv6 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E57
4fv7 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E94
4fv8 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E63
4fv9 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E71