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(-) Description

Title :  HUMAN ERK2 WITH AN ERK1/2 INHIBITOR
 
Authors :  J. E. Debreczeni, R. A. Ward, P. Bethel, C. Cook, E. Davies, K. Eckersley G. Fairley, L. Feron, V. Flemington, M. A. Graham, R. Greenwood, P. Hop T. D. Howard, J. Hudson, M. James, C. D. Jones, C. R. Jones, S. Lamont, R. N. Lindsay, K. Roberts, I. Simpson, S. Stgallay, S. Swallow, M. Tonge
Date :  21 Mar 17  (Deposition) - 19 Apr 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A
Keywords :  Erk2, Kinase, Inhibitor, Oncology, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Ward, P. Bethel, C. Cook, E. Davies, J. E. Debreczeni, G. Fairley, L. Feron, V. Flemington, M. A. Graham, R. Greenwood, N. Griffin, L. Hanson, P. Hopcroft, T. D. Howard, J. Hudson, M. James, C. D. Jones, C. R. Jones, S. Lamont, R. Lewis, N. Lindsay, K. Roberts, I. Simpson, S. St-Gallay, S. Swallow, J. Tang, M. Tonge, Z. Wang, B. Zhai
Structure-Guided Discovery Of Potent And Selective Inhibitors Of Erk1/2 From A Modestly Active And Promiscuous Chemical Start Point.
J. Med. Chem. V. 60 3438 2017
PubMed-ID: 28376306  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00267

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAPK1, ERK2, PRKM1, PRKM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED KINASE 2,ERK-2, MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED PROTEIN KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
18X51Ligand/Ion2-[2-(OXAN-4-YLAMINO)PYRIMIDIN-4-YL]-5-(PHENYLMETHYL)-6,7-DIHYDRO-1~{H}-PYRROLO[3,2-C]PYRIDIN-4-ONE
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:191 , ARG A:194 , TYR A:233 , HOH A:518 , HOH A:534binding site for residue SO4 A 401
2AC2SOFTWAREILE A:31 , GLY A:34 , GLY A:37 , VAL A:39 , ALA A:52 , LYS A:54 , ASP A:106 , MET A:108 , GLU A:109 , THR A:110 , ASP A:111 , LEU A:156 , HOH A:542binding site for residue 8X5 A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NHF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NHF)

(-) Exons   (0, 0)

(no "Exon" information available for 5NHF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee......eeeeeeeee...eeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh............hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5nhf A  12 EMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDDLPKEKLKELIFEETARFQ 355
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331||     345       355
                                                                                                                                                                               161-CME                                                                                                                                                                    332|                  
                                                                                                                                                                                                                                                                                                                                                           337
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NHF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NHF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NHF)

(-) Gene Ontology  (107, 107)

Asymmetric/Biological Unit(hide GO term definitions)

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  5nhf
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  MK01_HUMAN | P28482
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fuy 4fv0 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4n0s 4nif 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzn 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5NHF)