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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK3
 
Authors :  Y. N. Kang, J. A. Stuckey, X. Xie
Date :  28 Jun 12  (Deposition) - 22 Aug 12  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. N. Kang, J. A. Stuckey, X. Xie
Crystal Structure Of The Erk2 Complexed With Ek3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ERK2, MAPK1, PRKM1, PRKM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: HUMAN
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1CME3Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2EDO8Ligand/Ion1,2-ETHANEDIOL
3EK31Ligand/IonN-CYCLOHEXYL-4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDIN-2-AMINE
4GOL2Ligand/IonGLYCEROL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:29 , ALA A:50 , ASP A:104 , MET A:106 , GLU A:107 , ASP A:109 , LYS A:112BINDING SITE FOR RESIDUE EK3 A 401
02AC2SOFTWARELYS A:149 , SER A:151 , THR A:188BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWARELYS A:298 , ARG A:299 , GLN A:304BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREASN A:121 , TYR A:310 , GLN A:313 , HOH A:616BINDING SITE FOR RESIDUE EDO A 405
05AC5SOFTWAREHIS A:123 , TYR A:126 , ILE A:254 , TYR A:314BINDING SITE FOR RESIDUE EDO A 406
06AC6SOFTWAREARG A:75 , ALA A:323 , GLU A:324 , ALA A:325BINDING SITE FOR RESIDUE EDO A 407
07AC7SOFTWAREASN A:236 , GLY A:240 , LYS A:268BINDING SITE FOR RESIDUE EDO A 408
08AC8SOFTWARELEU A:263 , SER A:264 , LEU A:265 , PRO A:266BINDING SITE FOR RESIDUE EDO A 409
09AC9SOFTWAREGLU A:79 , ASN A:80 , GLN A:130 , ARG A:133 , ASP A:160 , HOH A:520 , HOH A:564BINDING SITE FOR RESIDUE GOL A 410
10BC1SOFTWAREASP A:286 , HIS A:308 , PRO A:309 , HOH A:539 , HOH A:607BINDING SITE FOR RESIDUE GOL A 411

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FV0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:20 -Pro A:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FV0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FV0)

(-) Exons   (0, 0)

(no "Exon" information available for 4FV0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4fv0a_ A: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..ee......eeeeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh............hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fv0 A   9 PEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKIcDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNcIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDDLPKEKLKELIFEETARFQPGY 356
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158|    | 168       178       188       198       208       218       228       238       248   |   258       268       278       288       298       308       318       328||     342       352    
                                                                                                                                                                                159-CME|                                                                                     252-CME                                                                      329|                      
                                                                                                                                                                                     164-CME                                                                                                                                                               334
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FV0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FV0)

(-) Gene Ontology  (107, 107)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fv0
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  MK01_HUMAN | P28482
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fuy 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4n0s 4nif 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzn 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhf 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

(-) Related Entries Specified in the PDB File

4fux CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E75
4fuy CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK2
4fv1 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK4
4fv2 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK5
4fv3 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK6
4fv4 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK7
4fv5 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH EK9
4fv6 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E57
4fv7 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E94
4fv8 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E63
4fv9 CRYSTAL STRUCTURE OF THE ERK2 COMPLEXED WITH E71