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(-) Description

Title :  HETERODIMERIC STRUCTURE OF ERK2 AND RSK1
 
Authors :  G. Gogl, A. Remenyi
Date :  06 Nov 13  (Deposition) - 12 Nov 14  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,D,E
Keywords :  Kinase Domain, Signaling, Substrate Kinase Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Alexa, G. Gogl, G. Glatz, A. Garai, A. Zeke, J. Varga, E. Dudas, N. Jeszenoi, A. Bodor, C. Hetenyi, A. Remenyi
Structural Assembly Of The Signaling Competent Erk2-Rsk1 Heterodimeric Protein Kinase Complex
Proc. Natl. Acad. Sci. Usa V. 112 2711 2015
PubMed-ID: 25730857  |  Reference-DOI: 10.1073/PNAS.1417571112

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S6 KINASE ALPHA-1
    Chains: A, D
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL KINASE DOMAIN, UNP RESIDUES 411-735
    Gene: RPS6KA1, MAPKAPK1A, RSK1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: S6K-ALPHA-1, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 1, P90-RSK 1, P90RSK1, P90S6K, MAP KINASE-ACTIVATED PROTEIN KINASE 1A, MAPK- ACTIVATED PROTEIN KINASE 1A, MAPKAP KINASE 1A, MAPKAPK-1A, RIBOSOMAL S6 KINASE 1, RSK-1
 
Molecule 2 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: B, E
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAPK1, ERK2, PRKM1, PRKM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2NA2Ligand/IonSODIUM ION
3SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:34 , ALA B:35 , TYR B:36 , GLY B:37 , VAL B:39 , ALA B:52 , LYS B:54 , ARG B:67 , GLN B:105 , ASP B:106 , MET B:108 , ASP B:111 , LYS B:114 , LYS B:151 , SER B:153 , ASP B:167 , HOH B:509 , HOH B:514 , HOH B:537 , HOH B:538 , HOH B:548 , HOH B:623 , HOH B:646 , HOH B:806BINDING SITE FOR RESIDUE ANP B 401
2AC2SOFTWAREASN A:568 , ARG B:191 , HIS B:232 , TYR B:233 , HOH B:539 , HOH B:713 , SER D:415 , TYR D:479 , HOH D:844BINDING SITE FOR RESIDUE SO4 B 402
3AC3SOFTWAREHIS B:61 , GLN B:62 , LYS B:340 , HOH B:789BINDING SITE FOR RESIDUE SO4 B 403
4AC4SOFTWAREARG B:70 , VAL B:173 , HOH B:515 , HOH B:738BINDING SITE FOR RESIDUE NA B 404
5AC5SOFTWAREGLU E:33 , GLY E:34 , ALA E:35 , TYR E:36 , GLY E:37 , VAL E:39 , ALA E:52 , LYS E:54 , ARG E:67 , GLN E:105 , ASP E:106 , MET E:108 , ASP E:111 , LYS E:151 , SER E:153 , LEU E:156 , ASP E:167 , HOH E:506 , HOH E:510 , HOH E:513 , HOH E:539 , HOH E:560 , HOH E:736 , HOH E:773BINDING SITE FOR RESIDUE ANP E 401
6AC6SOFTWARESER A:415 , TYR A:479 , HOH A:928 , ASN D:568 , ARG E:191 , HIS E:232 , TYR E:233 , HOH E:526 , HOH E:763BINDING SITE FOR RESIDUE SO4 E 402
7AC7SOFTWAREARG E:70 , VAL E:173 , PHE E:331 , HOH E:524 , HOH E:796BINDING SITE FOR RESIDUE NA E 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NIF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly B:22 -Pro B:23
2Gly E:22 -Pro E:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NIF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NIF)

(-) Exons   (0, 0)

(no "Exon" information available for 4NIF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..eeeeeeee....eeeeeeeee.....hhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....hhh.eee......ee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nif A 413 VFSDGYVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCYFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKLPQSQLSHQDLQLVKGAMAATYSALNSSKPTPQLKPIESSILAQRRVR 728
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572   ||  585       595       605       615       625       635       645       655       665       675       685       695       705       715       725   
                                                                                                                                                                                             576|                                                                                                                                                    
                                                                                                                                                                                              580                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..ee......eeeeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..................hhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nif B   9 AGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPGYRS 360
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178|      191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
                                                                                                                                                                                                   178|                                                                                                                                                                                  
                                                                                                                                                                                                    182                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee..eeeeeeee....eeeeeeeee.....hhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....hhh.eee......ee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nif D 413 VFSDGYVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCNFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKLPQSQLSHQDLQLVKGAMAATYSALNSSKPTPQLKPIESSILAQRRVR 728
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572  ||   585       595       605       615       625       635       645       655       665       675       685       695       705       715       725   
                                                                                                                                                                                            575|                                                                                                                                                     
                                                                                                                                                                                             579                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee..ee......eeeeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee...hhhhh..eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..................hhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhh......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nif E  10 GPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPGYRS 360
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352        
                                                                                                                                                                                                  178|                                                                                                                                                                                  
                                                                                                                                                                                                   182
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NIF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NIF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NIF)

(-) Gene Ontology  (120, 136)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6A1_HUMAN | Q15418: 2wnt 2z7q 2z7r 2z7s 3rny 3tei 4h3p 5csf 5csi 5csj 5csn
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fuy 4fv0 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4n0s 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzn 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhf 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

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