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(-) Description

Title :  COMPLEX OF ERK2 WITH CAFFEIC ACID
 
Authors :  I. Kurinov, M. Malakhova
Date :  02 Oct 13  (Deposition) - 27 Aug 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Caffeic Acid Complex, Mitogen-Activated Protein Kinase, Signal- Regulated Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Yang, Y. Fu, M. Malakhova, I. Kurinov, F. Zhu, K. Yao, H. Li, H. Chen, W. Li, D. Y. Lim, Y. Sheng, A. M. Bode, Z. Dong, Z. Dong
Caffeic Acid Directly Targets Erk1/2 To Attenuate Solar Uv-Induced Skin Carcinogenesis.
Cancer Prev Res (Phila) V. 7 1056 2014
PubMed-ID: 25104643  |  Reference-DOI: 10.1158/1940-6207.CAPR-14-0141
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21-CODONPLUS (DE3)-RIPL
    Expression System Taxid: 469008
    Gene: MAPK1, ERK2, PRKM1, PRKM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric/Biological Unit (5, 11)
No.NameCountTypeFull Name
1CME4Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2DHC1Ligand/IonCAFFEIC ACID
3DMS2Ligand/IonDIMETHYL SULFOXIDE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:34 , VAL A:39 , ALA A:52 , LYS A:54 , GLN A:105 , ASP A:106 , LEU A:107 , MET A:108 , CME A:166 , HOH A:763BINDING SITE FOR RESIDUE DHC A 401
2AC2SOFTWAREARG A:191 , ARG A:194 , TYR A:233 , HOH A:579 , HOH A:619 , HOH A:658 , HOH A:666 , HOH A:736 , HOH A:865BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWARELYS A:207 , HOH A:557 , HOH A:712 , HOH A:890BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWAREARG A:67 , ARG A:70 , LEU A:170 , ARG A:172 , VAL A:188 , HOH A:833 , HOH A:843BINDING SITE FOR RESIDUE SO4 A 404
5AC5SOFTWAREASP A:124 , TYR A:128 , ARG A:261 , HOH A:842BINDING SITE FOR RESIDUE PEG A 405
6AC6SOFTWAREALA A:352 , ARG A:353 , GLN A:355 , HOH A:868BINDING SITE FOR RESIDUE DMS A 406
7AC7SOFTWARELEU A:116 , LYS A:117 , GLN A:119 , ASN A:224BINDING SITE FOR RESIDUE DMS A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N0S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N0S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N0S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N0S)

(-) Exons   (0, 0)

(no "Exon" information available for 4N0S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeee....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh................hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n0s A   6 AAGAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYcQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKIcDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNcIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPG 357
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155     | 165|      175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355  
                                                                                      65-CME                                                                                         161-CME|                                                                                     254-CME                                                                                                   
                                                                                                                                                                                          166-CME
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N0S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N0S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N0S)

(-) Gene Ontology  (107, 107)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fuy 4fv0 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4nif 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzn 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhf 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

(-) Related Entries Specified in the PDB File

3sa0