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(-) Description

Title :  C-TERMINAL FRAGMENT OF AF1503-SOL: TRANSMEMBRANE RECEPTOR AF1503 FROM ARCHAEOGLOBUS FULGIDUS ENGINEERED FOR SOLUBILITY
 
Authors :  M. D. Hartmann, S. Dunin-Horkawicz, M. Hulko, J. Martin, M. Coles, A. N
Date :  11 Feb 14  (Deposition) - 12 Mar 14  (Release) - 11 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Protein, Hamp Domain, Two Component Signal Transduction, Transmembrane Signalling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Hartmann, S. Dunin-Horkawicz, M. Hulko, J. Martin, M. Coles, A. N. Lupas
A Soluble Mutant Of The Transmembrane Receptor Af1503 Features Strong Changes In Coiled-Coil Periodicity.
J. Struct. Biol. V. 186 357 2014
PubMed-ID: 24568954  |  Reference-DOI: 10.1016/J.JSB.2014.02.008

(-) Compounds

Molecule 1 - ENGINEERED VERSION OF TRANSMEMBRANE RECEPTOR AF1503
    Atcc: 49558
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL PROTEOLYTIC FRAGMENT WITH UNKNOWN CLEAVAGE SITE
    Mutation: YES
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CQ4)

(-) Sites  (0, 0)

(no "Site" information available for 4CQ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 4CQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:106
                                   242       252       262       272       282       292       302       312       322       332      
         O28769_ARCFU   233 ANPAENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4cq4 A 233 ANPAENIASEISKSVEGAIQQVKNLLTLAADRAEQIVNDLASTTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
                                   242       252       262       272       282       292       302       312       322       332      


Chain B from PDB  Type:PROTEIN  Length:102
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:102
                                   246       256       266       276       286       296       306       316       326       336  
         O28769_ARCFU   237 ENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4cq4 B 237 ENIASEISKSVEGAIQQVKNLLTLAADRAEQIVNDLASTTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
                                   246       256       266       276       286       296       306       316       326       336  


Chain C from PDB  Type:PROTEIN  Length:102
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:102
                                   246       256       266       276       286       296       306       316       326       336  
         O28769_ARCFU   237 ENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4cq4 C 237 ENIASEISKSVEGAIQQVKNLLTLAADRAEQIVNDLASTTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
                                   246       256       266       276       286       296       306       316       326       336  


Chain D from PDB  Type:PROTEIN  Length:102
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:102
                                   246       256       266       276       286       296       306       316       326       336  
         O28769_ARCFU   237 ENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4cq4 D 237 ENIASEISKSVEGAIQQVKNLLTLAADRAEQIVNDLASTTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEALK 338
                                   246       256       266       276       286       296       306       316       326       336
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CQ4)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (O28769_ARCFU | O28769)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  4cq4
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  O28769_ARCFU | O28769
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O28769_ARCFU | O28769: 2l7h 2l7i 2lfr 2lfs 2y0q 2y0t 2y20 2y21 3zcc 3zrv 3zrw 3zrx 3zx6 4cti 4gn0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4CQ4)