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(-) Description

Title :  THE SOLUTION STRUCTURE OF THE HAMP DOMAIN OF THE HYPOTHETICAL TRANSMEMBRANE RECEPTOR AF1503
 
Authors :  M. Coles, M. Hulko, J. Martin, A. N. Lupas
Date :  09 Dec 10  (Deposition) - 19 Jan 11  (Release) - 06 Apr 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (18x)
NMR Structure *:  A,B  (1x)
Keywords :  Complementary X-Da, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. U. Ferris, S. Dunin-Horkawicz, L. G. Mondejar, M. Hulko, K. Hantke, J. Martin, J. E. Schultz, K. Zeth, A. N. Lupas, M. Coles
The Mechanisms Of Hamp-Mediated Signaling In Transmembrane Receptors.
Structure V. 19 378 2011
PubMed-ID: 21397188  |  Reference-DOI: 10.1016/J.STR.2011.01.006
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PGEX-4T-1
    Fragment: HAMP DOMAIN RESIDUES 278-331
    Gene: AF1503, AF_1503
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  12
NMR Structure (18x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L7H)

(-) Sites  (0, 0)

(no "Site" information available for 2L7H)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L7H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L7H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L7H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L7H)

(-) Exons   (0, 0)

(no "Exon" information available for 2L7H)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:58
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:92
                                   249       259       269       279       289       299       309       319       329  
         O28769_ARCFU   240 ASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2l7h                                  a_ A: Hypothetical protein AF1503                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh----------------------------------hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 2l7h A 274 GSHMS----------------------------------TITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                |    -         -         -       279       289       299       309       319       329  
                              278                                279                                                    


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:92
                                   249       259       269       279       289       299       309       319       329  
         O28769_ARCFU   240 ASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2l7h                                  b_ B: Hypothetical protein AF1503                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------HAMP-2l7hB01 B:279-328                            --- Pfam domains (1)
           Pfam domains (2) ---------------------------------------HAMP-2l7hB02 B:279-328                            --- Pfam domains (2)
         Sec.struct. author .hhhh----------------------------------hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 2l7h B 274 GSHMS----------------------------------TITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                |    -         -         -       279       289       299       309       319       329  
                              278                                279
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L7H)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: HAMP] (12)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A,B   (O28769_ARCFU | O28769)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O28769_ARCFU | O28769: 2l7i 2lfr 2lfs 2y0q 2y0t 2y20 2y21 3zcc 3zrv 3zrw 3zrx 3zx6 4cq4 4cti 4gn0

(-) Related Entries Specified in the PDB File

2asw2l7i2y0q2y0t2y202y21
6795