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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF THE ASYMMETRIC R333G HAMP-DHP MUTANT
 
Authors :  K. Zeth, C. Muench, H. Ferris
Date :  19 Nov 12  (Deposition) - 26 Dec 12  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Signaling Protein, Signal Transduction, Membrane Protein, Signalling, Chimera (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Zeth, C. Muench, H. Ferris
Structure Of Mutant Of Hamp-Dhp Fusion
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HAMP, OSMOLARITY SENSOR PROTEIN ENVZ
    ChainsA, B
    EC Number2.7.13.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentRESIDUES 278-327,229-288
    MutationYES
    Organism ScientificARCHAEOGLOBUS FULGIDUS, ESCHERICHIA COLI K-12
    Organism Taxid2234, 83333
    SynonymHAMP-DHP FUSION PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ZCC)

(-) Sites  (0, 0)

(no "Site" information available for 3ZCC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZCC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZCC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZCC)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HAMPPS50885 HAMP domain profile.ENVZ_ECOLI180-232
 
  2A:282-331
B:282-331
2HIS_KINPS50109 Histidine kinase domain profile.ENVZ_ECOLI240-440
 
  2A:339-387
B:339-387

(-) Exons   (0, 0)

(no "Exon" information available for 3ZCC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with ENVZ_ECOLI | P0AEJ4 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:110
                                                         210                                                                              
                                                       209 |                                                                              
                                   189       199       209 |     218       228       238       248       258       268       278       288
           ENVZ_ECOLI   180 RIQNRPLVDLEHAALQVGKGIIPPPLREYG-ASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYL 288
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HAMP  PDB: A:282-331 UniProt: 180-232                 -------HIS_KIN  PDB: A:339-387 UniProt: 240-440          PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3zcc A 278 STITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYL 387
                                   287       297       307       317       327       337       347       357       367       377       387

Chain A from PDB  Type:PROTEIN  Length:110
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:214
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333    
         O28769_ARCFU   124 VILTHPAFTGQYEKYLGVDVAMLRWNETMPELYNLLLKITENPEAPKPVCGYYHWDDPETPEKEEIPKYLCHYPTTIKVYDPISKGQLWVVVGTSAYIDGYFQYLTQNPANPAENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEAL 337
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhh----------------------hhhhhh-------------------------hhhh-------------------hhh.......-------------------......hhhhhhhh-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhh--hhh.hh---------hh-----hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcc A 278 STITRP----------------------IIELSN-------------------------TADK-------------------IAEGNLEAEV-------------------PHQNRADEIGILAK-SIERLRRSLKQLADDGTLLMAGVSHDLRTPLTR--IRLA--TEMMSE---------QD-----GYLAESINKDIEECNAIIEQFIDYL 387
                                 |   -         -       285   |     -         -       290  |      -         -  |    301 |       -         - |     312    | |321       331       341        |- |  |  357  |      -  ||   363       373       383    
                               283                    284  289                       290  |                 294      303                 304          317 |                             350  |  |  |  360       361|   363                        
                                                                                        293                                                             318                                351  |  |             362                              
                                                                                                                                                                                              354  |                                              
                                                                                                                                                                                                 355                                              

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with ENVZ_ECOLI | P0AEJ4 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:110
                                                         210                                                                              
                                                       209 |                                                                              
                                   189       199       209 |     218       228       238       248       258       268       278       288
           ENVZ_ECOLI   180 RIQNRPLVDLEHAALQVGKGIIPPPLREYG-ASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYL 288
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HAMP  PDB: B:282-331 UniProt: 180-232                 -------HIS_KIN  PDB: B:339-387 UniProt: 240-440          PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3zcc B 278 STITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYL 387
                                   287       297       307       317       327       337       347       357       367       377       387

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:214
                                   133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333    
         O28769_ARCFU   124 VILTHPAFTGQYEKYLGVDVAMLRWNETMPELYNLLLKITENPEAPKPVCGYYHWDDPETPEKEEIPKYLCHYPTTIKVYDPISKGQLWVVVGTSAYIDGYFQYLTQNPANPAENIASEISKSVEGAIQQVYYALGIAAAIAIVFVIVLAVFTTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAMESLEEAL 337
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhh----------------------hhhhhh-------------------------hhhh-------------------hhh.......-------------------......hhhhhhhh-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhh--hhh...---------.h-----hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcc B 278 STITRP----------------------IIELSN-------------------------TADK-------------------IAEGNLEAEV-------------------PHQNRADEIGILAK-SIERLRRSLKQLADDGTLLMAGVSHDLRTPLTR--IRLA--TEMMSE---------QD-----GYLAESINKDIEECNAIIEQFIDYL 387
                                 |   -         -       285   |     -         -       290  |      -         -  |    301 |       -         - |     312    | |321       331       341        |- |  |  357  |      -  ||   363       373       383    
                               283                    284  289                       290  |                 294      303                 304          317 |                             350  |  |  |  360       361|   363                        
                                                                                        293                                                             318                                351  |  |             362                              
                                                                                                                                                                                              354  |                                              
                                                                                                                                                                                                 355                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZCC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZCC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZCC)

(-) Gene Ontology  (25, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ENVZ_ECOLI | P0AEJ4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004673    protein histidine kinase activity    Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0018106    peptidyl-histidine phosphorylation    The phosphorylation of peptidyl-histidine to form peptidyl-1'-phospho-L-histidine (otherwise known as tau-phosphohistidine, tele-phosphohistidine) or peptidyl-3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0047484    regulation of response to osmotic stress    Any process that modulates the rate or extent of the response to osmotic stress.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0009898    cytoplasmic side of plasma membrane    The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B   (O28769_ARCFU | O28769)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENVZ_ECOLI | P0AEJ41bxd 1joy 1njv 3zrv 3zrw 3zrx 4cti 4kp4 5b1n 5b1o 5dcj
UniProtKB/TrEMBL
        O28769_ARCFU | O287692l7h 2l7i 2lfr 2lfs 2y0q 2y0t 2y20 2y21 3zrv 3zrw 3zrx 3zx6 4cq4 4cti 4gn0

(-) Related Entries Specified in the PDB File

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