2Y21 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

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Biological Unit 6 (Jmol Viewer)

Title :   THE MECHANISMS OF HAMP-MEDIATED SIGNALING IN TRANSMEMBRANE RECEPTORS - THE A291V MUTANT

Authors :   K. Zeth, H. U. Ferris, M. Hulko, A. N. Lupas

Date :   12 Dec 10 (Deposition) - 30 Mar 11 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: K,L  (1x)
Biol. Unit 2: I,J  (1x)
Biol. Unit 3: G,H  (1x)
Biol. Unit 4: E,F  (1x)
Biol. Unit 5: C,D  (1x)
Biol. Unit 6: A,B  (1x)

Keywords :   Membrane Protein, Transmembrane Signalling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. U. Ferris, S. Dunin-Horkawicz, L. G. Mondejar, M. Hulko, K. Hantke, J. Martin, J. E. Schultz, K. Zeth, A. N. Lupas, M. Coles
The Mechanisms Of Hamp-Mediated Signaling In Transmembrane Receptors.
Structure V. 19 378 2011
PubMed-ID: 21397188 | Reference-DOI: 10.1016/J.STR.2011.01.006

Molecule 1 - UNCHARACTERIZED PROTEIN
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GST-FUSION
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	HAMP DOMAIN, RESIDUES 278-331
	Mutation	:	YES
	Organism Scientific	:	ARCHAEOGLOBUS FULGIDUS
	Organism Taxid	:	2234
	Other Details	:	GENOMIC DNA
	Synonym	:	AF1503

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:											K	L
Biological Unit 2 (1x)	:									I	J
Biological Unit 3 (1x)	:							G	H
Biological Unit 4 (1x)	:					E	F
Biological Unit 5 (1x)	:			C	D
Biological Unit 6 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2Y21)

(no "Site" information available for 2Y21)

(no "SS Bond" information available for 2Y21)

Asymmetric Unit

No.	Residues
1	Met A:330	-	Glu A:331
2	Ala G:329	-	Met G:330
3	Met I:330	-	Glu I:331

(no "SAP(SNP)/Variant" information available for 2Y21)

(no "PROSITE Motif" information available for 2Y21)

(no "Exon" information available for 2Y21)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:52
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:52
                                   289       299       309       319       329  
         O28769_ARCFU   280 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21a_ A: automated matches                         SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 2y21 A 280 ITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   289       299       309       319       329

Chain B from PDB  Type:PROTEIN  Length:53
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:53
                                   285       295       305       315       325   
         O28769_ARCFU   276 TTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKV 328
               SCOP domains d2y21b_ B: automated matches                          SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 2y21 B 276 HMSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKV 328
                                   285       295       305       315       325

Chain C from PDB  Type:PROTEIN  Length:52
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:52
                                   289       299       309       319       329  
         O28769_ARCFU   280 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21c_ C: automated matches                         SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 2y21 C 280 ITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   289       299       309       319       329

Chain D from PDB  Type:PROTEIN  Length:55
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:55
                                   286       296       306       316       326     
         O28769_ARCFU   277 TSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21d_ D: automated matches                            SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 2y21 D 277 MSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   286       296       306       316       326

Chain E from PDB  Type:PROTEIN  Length:54
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:54
                                   287       297       307       317       327    
         O28769_ARCFU   278 STITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21e_ E: automated matches                           SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 2y21 E 278 STITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   287       297       307       317       327

Chain F from PDB  Type:PROTEIN  Length:55
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:55
                                   286       296       306       316       326     
         O28769_ARCFU   277 TSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21f_ F: automated matches                            SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 2y21 F 277 MSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   286       296       306       316       326

Chain G from PDB  Type:PROTEIN  Length:52
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:52
                                   288       298       308       318       328  
         O28769_ARCFU   279 TITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAM 330
               SCOP domains d2y21g_ G: automated matches                         SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 2y21 G 279 TITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAM 330
                                   288       298       308       318       328

Chain H from PDB  Type:PROTEIN  Length:50
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:50
                                   289       299       309       319       329
         O28769_ARCFU   280 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
               SCOP domains d2y21h_ H: automated matches                       SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 2y21 H 280 ITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
                                   289       299       309       319       329

Chain I from PDB  Type:PROTEIN  Length:52
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:52
                                   289       299       309       319       329  
         O28769_ARCFU   280 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
               SCOP domains d2y21i_ I: automated matches                         SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 2y21 I 280 ITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVAME 331
                                   289       299       309       319       329

Chain J from PDB  Type:PROTEIN  Length:54
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:54
                                   285       295       305       315       325    
         O28769_ARCFU   276 TTSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
               SCOP domains d2y21j_ J: automated matches                           SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 2y21 J 276 HMSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
                                   285       295       305       315       325

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:49
                                   289       299       309       319         
         O28769_ARCFU   280 ITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKV 328
               SCOP domains d2y21k_ K: automated matches                      SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 2y21 K 280 ITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKV 328
                                   289       299       309       319

Chain L from PDB  Type:PROTEIN  Length:53
 aligned with O28769_ARCFU | O28769 from UniProtKB/TrEMBL  Length:338

    Alignment length:53
                                   286       296       306       316       326   
         O28769_ARCFU   277 TSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
               SCOP domains d2y21l_ L: automated matches                          SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
           Pfam domains (1) -HAMP-2y21L01 L:278-328                             - Pfam domains (1)
           Pfam domains (2) -HAMP-2y21L02 L:278-328                             - Pfam domains (2)
           Pfam domains (3) -HAMP-2y21L03 L:278-328                             - Pfam domains (3)
           Pfam domains (4) -HAMP-2y21L04 L:278-328                             - Pfam domains (4)
           Pfam domains (5) -HAMP-2y21L05 L:278-328                             - Pfam domains (5)
           Pfam domains (6) -HAMP-2y21L06 L:278-328                             - Pfam domains (6)
           Pfam domains (7) -HAMP-2y21L07 L:278-328                             - Pfam domains (7)
           Pfam domains (8) -HAMP-2y21L08 L:278-328                             - Pfam domains (8)
           Pfam domains (9) -HAMP-2y21L09 L:278-328                             - Pfam domains (9)
          Pfam domains (10) -HAMP-2y21L10 L:278-328                             - Pfam domains (10)
          Pfam domains (11) -HAMP-2y21L11 L:278-328                             - Pfam domains (11)
          Pfam domains (12) -HAMP-2y21L12 L:278-328                             - Pfam domains (12)
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 2y21 L 277 MSTITRPIIELSNTVDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKVA 329
                                   286       296       306       316       326

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: HAMP domain-like (6)

Superfamily: HAMP domain-like (6)

Family: HAMP domain (6)

Protein domain: automated matches (4)

Archaeoglobus fulgidus [TaxId: 2234] (4)

1a	d2y21a_	A:
1b	d2y21b_	B:
1c	d2y21c_	C:
1d	d2y21d_	D:
1e	d2y21e_	E:
1f	d2y21f_	F:
1g	d2y21g_	G:
1h	d2y21h_	H:
1i	d2y21i_	I:
1j	d2y21j_	J:
1k	d2y21k_	K:
1l	d2y21l_	L:

(no "CATH Domain" information available for 2Y21)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: HAMP] (12)

Family: HAMP (12)

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (8)

1a	HAMP-2y21L01	L:278-328
1b	HAMP-2y21L02	L:278-328
1c	HAMP-2y21L03	L:278-328
1d	HAMP-2y21L04	L:278-328
1e	HAMP-2y21L05	L:278-328
1f	HAMP-2y21L06	L:278-328
1g	HAMP-2y21L07	L:278-328
1h	HAMP-2y21L08	L:278-328
1i	HAMP-2y21L09	L:278-328
1j	HAMP-2y21L10	L:278-328
1k	HAMP-2y21L11	L:278-328
1l	HAMP-2y21L12	L:278-328

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (O28769_ARCFU | O28769)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	Sites
(no "Sites" information available for 2y21)

	Cis Peptide Bonds
		Ala G:329 - Met G:330	[ RasMol ]
		Met A:330 - Glu A:331	[ RasMol ]
		Met I:330 - Glu I:331	[ RasMol ]

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	2y21
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2y0q	THE MECHANISMS OF HAMP-MEDIATED SIGNALING IN TRANSMEMBRANE RECEPTORS - THE A291C MUTANT
2y0t	THE MECHANISMS OF HAMP-MEDIATED SIGNALING IN TRANSMEMBRANE RECEPTORS - THE A291F MUTANT
2y20	THE MECHANISMS OF HAMP-MEDIATED SIGNALING IN TRANSMEMBRANE RECEPTORS - THE A291I MUTANT

Description

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Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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SCOP Domains (1, 12)

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