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(-) Description

Title :  HUMAN ERK2 IN COMPLEX WITH AN INHIBITOR
 
Authors :  R. A. Ward, N. Colclough, M. Challinor, J. E. Debreczeni, K. Eckersley, G. Fairley, L. Feron, V. Flemington, M. A. Graham, R. Greenwood, P. Hop T. D. Howard, M. James, C. D. Jones, C. R. Jones, J. Renshaw, K. Roberts, M. Tonge, K. Yeung
Date :  10 Apr 15  (Deposition) - 27 May 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Ward, N. Colclough, M. Challinor, J. Debreczeni, K. Eckersley, G. Fairley, L. Feron, V. Flemington, M. A. Graham, R. Greenwood, P. Hopcroft, T. D. Howard, M. James, C. D. Jones, C. R. Jones, J. Renshaw K. Roberts, L. Snow, M. Tonge, K. Yeung
Structure-Guided Design Of Highly Selective And Potent Covalent Inhibitors Of Erk1/2.
J. Med. Chem. V. 58 4790 2015
PubMed-ID: 25977981  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00466

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN, RESIDUES 11-360
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: MODIFIED CYS 161 A
    Synonym: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2CQ81Ligand/Ion2-[[5-CHLORANYL-2-(OXAN-4-YLAMINO)PYRIDIN-4-YL]AMINO]-N-METHYL-BENZAMIDE
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:185 , ARG A:189 , ARG A:192 , TYR A:231 , HOH A:2219 , HOH A:2248BINDING SITE FOR RESIDUE SO4 A1354
2AC2SOFTWAREGLU A:31 , VAL A:37 , ALA A:50 , GLN A:103 , ASP A:104 , MET A:106 , GLU A:107 , THR A:108 , ASP A:109 , ASN A:152 , LEU A:154 , CYS A:164 , HOH A:2137 , HOH A:2196BINDING SITE FOR RESIDUE CQ8 A1355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZZN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:20 -Pro A:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZN)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..ee......eeeeeeeeee..eeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eee..........eeeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.hhhhh..........hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhh...hhhhh..........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zzn A   9 PEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTcDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFDDLPKEKLKELIFEETARFQ 353
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158|      168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       334       344         
                                                                                                                                                                                159-CME                                                                                                                                                                 327|                   
                                                                                                                                                                                                                                                                                                                                                         334
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZN)

(-) Gene Ontology  (107, 107)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_HUMAN | P28482: 1pme 1tvo 1wzy 2ojg 2oji 2ojj 2y9q 3d42 3d44 3i5z 3i60 3sa0 3tei 3w55 4fmq 4fux 4fuy 4fv0 4fv1 4fv2 4fv3 4fv4 4fv5 4fv6 4fv7 4fv8 4fv9 4g6n 4g6o 4h3p 4h3q 4iz5 4iz7 4iza 4n0s 4nif 4o6e 4qp1 4qp2 4qp3 4qp4 4qp6 4qp7 4qp8 4qp9 4qpa 4qta 4qte 4xj0 4zxt 4zzm 4zzo 5ax3 5bue 5bui 5buj 5bvd 5bve 5bvf 5k4i 5lcj 5lck 5ngu 5nhf 5nhh 5nhj 5nhl 5nho 5nhp 5nhv

(-) Related Entries Specified in the PDB File

4zzm HUMAN ERK2 IN COMPLEX WITH AN IRREVERSIBLE INHIBITOR
4zzo HUMAN ERK2 IN COMPLEX WITH AN IRREVERSIBLE INHIBITOR