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(-) Description

Title :  DISULFIDE STABILIZED HIV-1 CA HEXAMER 4MUT (S41A, Q67H, V165I, L172I)
 
Authors :  A. J. Price, L. C. James
Date :  21 Jan 15  (Deposition) - 15 Jul 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Viral Protein, Capsid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhou, A. J. Price, U. D. Halambage, L. C. James, C. Aiken
Hiv-1 Resistance To The Capsid-Targeting Inhibitor Pf74 Results In Altered Dependence On Host Factors Required For Virus Nuclear Entry.
J. Virol. V. 89 9068 2015
PubMed-ID: 26109731  |  Reference-DOI: 10.1128/JVI.00340-15

(-) Compounds

Molecule 1 - CAPSID PROTEIN P24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GAG
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE NY5)
    Organism Taxid: 11698
    Synonym: PR55GAG, CA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XRO)

(-) Sites  (0, 0)

(no "Site" information available for 4XRO)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -A:45
2A:198 -A:218

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XRO)

(-) Exons   (0, 0)

(no "Exon" information available for 4XRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xro A   1 PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFAALSCGATPQDLNTMLNTVGGHQAAMHMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYIDRFYKTIRAEQATETLLVQNANPDCKTILKALGPGATLEEMMTACQ 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      |188       198       208       218 
                                                                                                                                                                                                          177|                                 
                                                                                                                                                                                                           186
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XRO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XRO)

(-) Gene Ontology  (21, 21)

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  Sites
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  Cis Peptide Bonds
    Asn A:121 - Pro A:122   [ RasMol ]  
 
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  4xro
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  GAG_HV1N5 | P12493
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_HV1N5 | P12493: 1gwp 1hiw 1uph 2c55 2x2d 3gv2 4u0a 4u0b 4u0c 4u0d 4u0e 4u0f 4xfx 4xfy 4xfz 4xrq 5hgl 5hgm 5hgn 5hgo 5hgp 5irt 5jpa 5l93 5o2u 5upw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XRO)