Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  FULL LENGTH GLUA2-KAINATE-(R,R)-2B COMPLEX CRYSTAL FORM B
 
Authors :  L. Chen, E. Gouaux
Date :  16 Jul 14  (Deposition) - 20 Aug 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ampa Receptor, Transport Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. L. Durr, L. Chen, R. A. Stein, R. De Zorzi, I. M. Folea, T. Walz, H. S. Mchaourab, E. Gouaux
Structure And Dynamics Of Ampa Receptor Glua2 In Resting, Pre-Open, And Desensitized States.
Cell V. 158 778 2014
PubMed-ID: 25109876  |  Reference-DOI: 10.1016/J.CELL.2014.07.023

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: RIC15
    Expression System Taxid: 9606
    Gene: GRIA2, GLUR2
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2,GLUA2

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1FWF2Ligand/IonN,N'-[BIPHENYL-4,4'-DIYLDI(2R)PROPANE-2,1-DIYL]DIPROPANE-2-SULFONAMIDE
2KAI4Ligand/Ion3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:450 , PRO A:478 , THR A:480 , ARG A:485 , LEU A:650 , GLY A:653 , SER A:654 , THR A:655 , GLU A:705 , MET A:708binding site for residue KAI A 901
02AC2SOFTWARETYR B:450 , PRO B:478 , THR B:480 , LEU B:650 , GLY B:653 , SER B:654 , THR B:655 , THR B:686 , GLU B:705binding site for residue KAI B 901
03AC3SOFTWARELYS B:493 , PRO B:494 , SER B:497 , SER B:729 , GLY B:731 , LEU B:751 , SER B:754 , ILE C:481 , PRO C:494 , PHE C:495 , SER C:729 , LYS C:730 , GLY C:731 , LEU C:751 , SER C:754binding site for residue FWF B 903
04AC4SOFTWARETYR C:450 , PRO C:478 , THR C:480 , ARG C:485 , LEU C:650 , GLY C:653 , SER C:654 , THR C:655 , GLU C:705binding site for residue KAI C 901
05AC5SOFTWARETYR D:450 , PRO D:478 , THR D:480 , ARG D:485 , LEU D:650 , GLY D:653 , SER D:654 , THR D:655 , GLU D:705 , MET D:708binding site for residue KAI D 901
06AC6SOFTWAREHIS B:212 , PHE B:235 , GLY B:236 , HIS D:212 , VAL D:213 , LYS D:214binding site for residue MES D 903
07AC7SOFTWAREPRO A:494 , SER A:497 , SER A:729 , LEU A:751 , SER A:754 , LYS D:493 , PRO D:494 , SER D:497 , SER D:729 , LYS D:730 , GLY D:731 , LEU D:751 , SER D:754binding site for residue FWF D 904
08AC8SOFTWAREILE A:352 , ASN A:353 , GLU A:374 , VAL A:375 , ARG B:660 , ARG B:661 , TRP B:671 , ARG B:675binding site for Mono-Saccharide NAG A 902 bound to ASN A 353
09AC9SOFTWAREGLN B:335 , ASN B:342 , ASN B:353binding site for Mono-Saccharide NAG B 902 bound to ASN B 353
10AD1SOFTWAREASN C:353 , VAL C:375 , ARG D:660 , SER D:662 , TRP D:671 , ARG D:675binding site for Mono-Saccharide NAG C 902 bound to ASN C 353
11AD2SOFTWAREASN D:342 , ASN D:353binding site for Mono-Saccharide NAG D 902 bound to ASN D 353

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:61 -A:313
2A:718 -A:773
3B:61 -B:313
4B:718 -B:773
5C:61 -C:313
6C:718 -C:773
7D:61 -D:313
8D:718 -D:773

(-) Cis Peptide Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1Asn A:316 -Pro A:317
2Ser A:403 -Pro A:404
3Pro A:507 -Gln A:508
4Glu A:678 -Pro A:679
5Lys A:716 -Pro A:717
6Asn B:316 -Pro B:317
7Ser B:403 -Pro B:404
8Glu B:678 -Pro B:679
9Lys B:716 -Pro B:717
10Ser C:403 -Pro C:404
11Ser C:631 -Pro C:632
12Glu C:678 -Pro C:679
13Lys C:716 -Pro C:717
14Asn D:316 -Pro D:317
15Ser D:403 -Pro D:404
16Glu D:678 -Pro D:679
17Lys D:716 -Pro D:717

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U1X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U1X)

(-) Exons   (0, 0)

(no "Exon" information available for 4U1X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:743
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhhh....eeeeeeeee...hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh.....eeeee..................eeeeee.....hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh..eee..eee...........eeeeeeee..eeeeeeeee...eeee..............eeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh..eeeee................hhhhhhhhh....ee......hhhhhhheee....eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeeehhhhhhhhh.....eeee.....eeee..eee....hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u1x A   8 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTEDDTSGLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKFSFLDPLAYEIWMAIVFAYILVSVVLFLVSPRSLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKSALSLSNVAGVFYILVGGLGLAMLVALI 812
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507 ||    522       532       542 ||    600       610       620       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771    || 789       799       809   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               509|                          544|                                 629|                                                                                                                                              776|                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                515                           593                                  631                                                                                                                                               785                           


Chain B from PDB  Type:PROTEIN  Length:738
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.eeeee..hhhhhhhhhhhhhhhh....eee..eeee...hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhh......eeee..................eeeeee.....hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh..ee....ee............eeeeee....eeeeeeee...eeee...........eeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh..eeeee................hhhhhhhhh....ee......hhhhhhhhee....eee.eeeeee...........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh...eee....hhhhhhhhh..hhhhhhhhhhhhh........hhhhhhhhhhh....eeeeeehhhhhhhhh.....eeee......eee..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u1x B   8 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTEDDLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVPLAYEIWMAIVFAYILVSVVLFLVARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKALSLSNVAGVFYILVGGLGLAMLVALIEFAY 816
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       390       400       410       420       430       440       450       460       470       480       490       500       510   ||  525       535       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769      |788       798       808        
                                                                                                                                                                                                                                                                                                                                                                                                                    386|                                                                                                                         514|                    543|                                                                                                                                                                               776|                              
                                                                                                                                                                                                                                                                                                                                                                                                                     390                                                                                                                          520                     598                                                                                                                                                                                786                              


Chain C from PDB  Type:PROTEIN  Length:755
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhh......eeee.........hhhhhh...eeeeee.....hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh..ee....ee............eeeeee....eeeeeeee...eeee.........eeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eehhhhhhhh....ee......hhhhhhhhee....eee.eeeeee.......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh...eee....hhhhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhh....eeeeeehhhhhhhhh.....eeee......eee..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u1x C   9 SIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTELEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLVSRFPRSLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 814
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378     ||393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543  ||   599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809     
                                                                                                                                                                                                                                                                                                                                                                                                                 384|                                                                                                                                                         546|                                                                                                                                                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                                                  390                                                                                                                                                          593                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:744
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh.........eeeee...hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh..eeee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhh....eeee..........hhhhhh...eeeeee.....hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh.eee..eeeee.....ee...eeeeeee..eeeeeeeee...eeee.........eeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eeehhhhhhh....eeee....hhhhhhhhee.....ee.eeeeee........hhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh...eee....hhhhhhhhh..hhhhhhhhhhhhh........hhhhhhhhhhhhhh.eeeeeehhhhhhhhh.....eeee......ee.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u1x D  10 IQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTELEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLVSPRSLSARIVAGVWWFFTLIIISSYTANLAAFLTVMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFA 815
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379    || 394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544|      602       612       622   ||  634       644       654       664       674       684       694       704       714       724       734       744       754       764       774|      791       801       811    
                                                                                                                                                                                                                                                                                                                                                                                                                384|                                                                                                                                                       544|                              626|                                                                                                                                              774|                                 
                                                                                                                                                                                                                                                                                                                                                                                                                 390                                                                                                                                                        593                               629                                                                                                                                               782
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U1X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U1X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U1X)

(-) Gene Ontology  (49, 49)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FWF  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KAI  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MES  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:316 - Pro A:317   [ RasMol ]  
    Asn B:316 - Pro B:317   [ RasMol ]  
    Asn D:316 - Pro D:317   [ RasMol ]  
    Glu A:678 - Pro A:679   [ RasMol ]  
    Glu B:678 - Pro B:679   [ RasMol ]  
    Glu C:678 - Pro C:679   [ RasMol ]  
    Glu D:678 - Pro D:679   [ RasMol ]  
    Lys A:716 - Pro A:717   [ RasMol ]  
    Lys B:716 - Pro B:717   [ RasMol ]  
    Lys C:716 - Pro C:717   [ RasMol ]  
    Lys D:716 - Pro D:717   [ RasMol ]  
    Pro A:507 - Gln A:508   [ RasMol ]  
    Ser A:403 - Pro A:404   [ RasMol ]  
    Ser B:403 - Pro B:404   [ RasMol ]  
    Ser C:403 - Pro C:404   [ RasMol ]  
    Ser C:631 - Pro C:632   [ RasMol ]  
    Ser D:403 - Pro D:404   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4u1x
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GRIA2_RAT | P19491
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GRIA2_RAT | P19491
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRIA2_RAT | P19491: 1ftj 1ftk 1ftl 1ftm 1fto 1fw0 1gr2 1lb8 1lb9 1lbb 1lbc 1m5b 1m5c 1m5d 1m5e 1m5f 1mm6 1mm7 1mqd 1mqg 1mqh 1mqi 1mqj 1ms7 1mxu 1mxv 1mxw 1mxx 1mxy 1mxz 1my0 1my1 1my2 1my3 1my4 1n0t 1nnk 1nnp 1p1n 1p1o 1p1q 1p1u 1p1w 1syh 1syi 1wvj 1xhy 2aix 2al4 2al5 2anj 2cmo 2gfe 2i3v 2i3w 2p2a 2uxa 2xx7 2xx8 2xx9 2xxh 2xxi 3b6q 3b6t 3b6w 3b7d 3bbr 3bft 3bfu 3bki 3dp6 3h03 3h06 3h5v 3h5w 3h6t 3h6u 3h6v 3h6w 3hsy 3ijo 3ijx 3ik6 3il1 3ilt 3ilu 3kg2 3kgc 3lsf 3lsl 3m3l 3n6v 3o28 3o29 3o2a 3o2j 3o6g 3o6h 3o6i 3pd8 3pd9 3pmv 3pmw 3pmx 3rtf 3rtw 3t93 3t96 3t9h 3t9u 3t9v 3t9x 3tdj 3tkd 3tza 4fat 4g8m 4gxs 4h8j 4igt 4isu 4iy5 4iy6 4l17 4lz5 4lz7 4lz8 4n07 4o3a 4o3b 4o3c 4q30 4u1o 4u1w 4u1y 4u1z 4u21 4u22 4u23 4u2p 4u2q 4u2r 4u4f 4u4g 4u4s 4u4x 4u5b 4u5c 4u5d 4u5e 4u5f 4uq6 4uqj 4uqk 4x48 4yma 4yu0 4z0i 5buu 5cbr 5cbs 5elv 5fhm 5fhn 5fho 5fth 5fti 5fwx 5fwy 5ide 5idf 5jei 5kbs 5kbt 5kbu 5kbv 5kk2 5l1b 5l1e 5l1f 5l1g 5l1h 5vhw 5vhx 5vhy 5vhz 5vot 5vou 5vov

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4U1X)