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(-) Description

Title :  CRYSTAL STRUCTURE OF K29 LINKED DI-UBIQUITIN
 
Authors :  Y. A. Kristariyanto, S. A. Abdul Rehman, D. G. Campbell, N. A. Morrice, C. Johnson, R. Toth, Y. Kulathu
Date :  17 Jan 15  (Deposition) - 08 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Zinc Finger, Hydrolase, Protease, Ubiquitin Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. A. Kristariyanto, S. A. Abdul Rehman, D. G. Campbell, N. A. Morrice C. Johnson, R. Toth, Y. Kulathu
K29-Selective Ubiquitin Binding Domain Reveals Structural Basis Of Specificity And Heterotypic Nature Of K29 Polyubiquitin.
Mol. Cell V. 58 83 2015
PubMed-ID: 25752573  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.041

(-) Compounds

Molecule 1 - UBIQUITIN
    Chains: A, B, C, D
    Fragment: RESIDUES 77-152
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BLOOD

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3IOD6Ligand/IonIODIDE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL-1Ligand/IonGLYCEROL
3IOD5Ligand/IonIODIDE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3IOD1Ligand/IonIODIDE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:65BINDING SITE FOR RESIDUE IOD A 101
2AC2SOFTWARELEU A:73BINDING SITE FOR RESIDUE IOD A 102
3AC3SOFTWARELEU B:71BINDING SITE FOR RESIDUE IOD B 101
4AC4SOFTWAREGLY B:47BINDING SITE FOR RESIDUE IOD B 102
5AC5SOFTWAREALA B:46 , LYS B:48BINDING SITE FOR RESIDUE EDO B 103
6AC6SOFTWAREGLU D:16BINDING SITE FOR RESIDUE IOD D 101
7AC7SOFTWAREALA D:46 , LYS D:48 , ARG D:74BINDING SITE FOR RESIDUE GOL D 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4S22)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4S22)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S22)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S22)

(-) Exons   (0, 0)

(no "Exon" information available for 4S22)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  4s22 A  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
                                    10        20        30        40        50        60        70   


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4s22 B  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
                                    10        20        30        40        50        60        70      


Chain C from PDB  Type:PROTEIN  Length:73
                                                                                                        
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  4s22 C  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
                                    10        20        30        40        50        60        70   


Chain D from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4s22 D  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S22)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S22)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S22)

(-) Gene Ontology  (8, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1B9K1_BOVIN | E1B9K1: 4ljo 4ljp
        RL40_BOVIN | P63048: 1aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 3h1u 3m3j 4ljo 4ljp

(-) Related Entries Specified in the PDB File

4s1z CRYSTAL STRUCTURE OF TRABID NZF1 IN COMPLEX WITH K29 LINKED DI-UBIQUITIN