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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH INH2BP.
 
Authors :  W. Qiu, R. Lam, V. Romanov, R. Gordon, S. Gebremeskel, J. Vodsedalek, C. I. Beletskaya, K. P. Battaile, E. F. Pai, N. Y. Chirgadze
Date :  25 May 14  (Deposition) - 15 Oct 14  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Poly(Adp-Ribosylation) Polymerase (Parp), Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, R. Lam, O. Voytyuk, V. Romanov, R. Gordon, S. Gebremeskel, J. Vodsedalek, C. Thompson, I. Beletskaya, K. P. Battaile, E. F. Pai, R. Rottapel, N. Y. Chirgadze
Insights Into The Binding Of Parp Inhibitors To The Catalytic Domain Of Human Tankyrase-2.
Acta Crystallogr. , Sect. D V. 70 2740 2014
PubMed-ID: 25286857  |  Reference-DOI: 10.1107/S1399004714017660

(-) Compounds

Molecule 1 - TANKYRASE-2
    Chains: A, B, C, D
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PARP, CATALYTIC DOMAIN
    Gene: TNKS2, PARP5B, TANK2, TNKL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, TANKYRASE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
132Y3Ligand/Ion6-AMINO-5-IODO-2H-CHROMEN-2-ONE
2GOL2Ligand/IonGLYCEROL
3ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
132Y1Ligand/Ion6-AMINO-5-IODO-2H-CHROMEN-2-ONE
2GOL-1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
132Y1Ligand/Ion6-AMINO-5-IODO-2H-CHROMEN-2-ONE
2GOL-1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
132Y1Ligand/Ion6-AMINO-5-IODO-2H-CHROMEN-2-ONE
2GOL2Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
132Y-1Ligand/Ion6-AMINO-5-IODO-2H-CHROMEN-2-ONE
2GOL-1Ligand/IonGLYCEROL
3ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1081 , HIS A:1084 , CYS A:1089 , CYS A:1092binding site for residue ZN A 1201
2AC2SOFTWAREHIS A:1031 , GLY A:1032 , TYR A:1060 , SER A:1068 , TYR A:1071 , GLU A:1138 , HOH A:1500binding site for residue 32Y A 1202
3AC3SOFTWARECYS B:1081 , HIS B:1084 , CYS B:1089 , CYS B:1092binding site for residue ZN B 1201
4AC4SOFTWAREHIS B:1031 , GLY B:1032 , TYR B:1060 , SER B:1068 , TYR B:1071 , GLU B:1138 , HOH B:1465 , HOH B:1480binding site for residue 32Y B 1202
5AC5SOFTWARECYS C:1081 , HIS C:1084 , CYS C:1089 , CYS C:1092binding site for residue ZN C 1201
6AC6SOFTWAREHIS C:1031 , GLY C:1032 , TYR C:1060 , SER C:1068 , TYR C:1071 , GLU C:1138 , GOL C:1203 , HOH C:1446binding site for residue 32Y C 1202
7AC7SOFTWAREHOH B:1326 , MET C:1054 , LYS C:1067 , LEU C:1134 , GLU C:1138 , 32Y C:1202 , HOH C:1384 , HOH C:1459binding site for residue GOL C 1203
8AC8SOFTWAREHIS C:1031 , PHE C:1044 , ASP C:1045 , HOH C:1411 , HOH C:1483 , HOH C:1549binding site for residue GOL C 1204
9AC9SOFTWARECYS D:1081 , HIS D:1084 , CYS D:1089 , CYS D:1092binding site for residue ZN D 1200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PNS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu D:1136 -Ala D:1137

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PNS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PNS)

(-) Exons   (0, 0)

(no "Exon" information available for 4PNS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh................eeeeeeee..hhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.......eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee..........eeee.hhh.eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pns A  962 DKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRP 1160
                                   971       981       991      1001      1011      1021      1031      1041      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153       
                                                                                                                1049|                                                                                                            
                                                                                                                 1052                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhhhhhhh................eeeeeeeee.hhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh........eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee.......eeee.hhh.eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pns B  954 LYFQGDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPGLALAEYVIYRGEQAYPEYLITYQIMRP 1160
                                || 966       976       986       996      1006      1016      1026      1036      1046   || 1057      1067      1077      1087      1097      1107      1117      1127 ||   1140      1150      1160
                              958|                                                                                    1050|                                                                         1129|                           
                               962                                                                                     1052                                                                          1133                           


Chain C from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhhhhhhhhhh................eeeeeeeee.hhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee..........eeee.hhh.eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pns C  953 NLYFQGSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRP 1160
                                   962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152        


Chain D from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh................eeeeeeee..hhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee....eeee.hhh.eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pns D  965 FQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPLAEYVIYRGEQAYPEYLITYQIMRP 1160
                                   974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124    ||1140      1150      1160
                                                                                                                                                                                             1129|                        
                                                                                                                                                                                              1136
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PNS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PNS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PNS)

(-) Gene Ontology  (29, 29)

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  4pns
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  TNKS2_HUMAN | Q9H2K2
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS2_HUMAN | Q9H2K2: 2y0i 3kr7 3kr8 3mhj 3mhk 3p0n 3p0p 3p0q 3twq 3twr 3tws 3twt 3twu 3twv 3tww 3twx 3u9h 3u9y 3ua9 3w51 4avu 4avw 4bfp 4bj9 4bjb 4bjc 4bs4 4bu3 4bu5 4bu6 4bu7 4bu8 4bu9 4bua 4bud 4bue 4buf 4bui 4bus 4but 4buu 4buv 4buw 4bux 4buy 4hki 4hkk 4hkn 4hl5 4hlf 4hlg 4hlh 4hlk 4hlm 4hmh 4hyf 4iue 4j1z 4j21 4j22 4j3l 4j3m 4kzl 4kzq 4kzu 4l09 4l0b 4l0i 4l0s 4l0t 4l0v 4l10 4l2f 4l2g 4l2k 4l31 4l32 4l33 4l34 4m7b 4pml 4pnl 4pnm 4pnn 4pnq 4pnr 4pnt 4tju 4tjw 4tjy 4tk0 4tk5 4tkf 4tkg 4tki 4ufu 4ufy 4uhg 4ui3 4ui4 4ui5 4ui6 4ui7 4ui8 4uvl 4uvn 4uvo 4uvp 4uvs 4uvt 4uvu 4uvv 4uvw 4uvx 4uvy 4uvz 4ux4 4w5i 4z68 5adq 5adr 5ads 5adt 5aeh 5aku 5akw 5al1 5al2 5al3 5al4 5al5 5bxo 5bxu 5c5p 5c5q 5c5r 5dcz 5fpf 5fpg 5jrt

(-) Related Entries Specified in the PDB File

4pml 4pnl 4pnm 4pnn 4pnq 4pnr 4pnt 4tju 4tjw 4tjy 4tk0 4tk5 4tkf 4tkg 4tki