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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TANKYRASE 2 IN COMPLEX WITH OD332
 
Authors :  A. Ignatev, L. Lehtio
Date :  31 Aug 15  (Deposition) - 13 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Protein-Ligand Complex, Diphtheria Toxin Like Fold, Adp-Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Haikarainen, J. Waaler, A. Ignatev, Y. Nkizinkiko, H. Venkannagari, E. Obaji, S. Krauss, L. Lehtio
Development And Structural Analysis Of Adenosine Site Binding Tankyrase Inhibitors.
Bioorg. Med. Chem. Lett. V. 26 328 2016
PubMed-ID: 26706174  |  Reference-DOI: 10.1016/J.BMCL.2015.12.018

(-) Compounds

Molecule 1 - TANKYRASE-2
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL FRAGMENT, RESIDUES 946-1162
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK2, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6, ARTD6, POLY ADP-RIBOSE POLYMERASE 5B, TNKS-2, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE II, TANKYRASE- LIKE PROTEIN, TANKYRASE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
18IR2Ligand/IonN-{4-[(2-CHLOROPHENYL)(PYRIMIDIN-4-YL)CARBAMOYL]PHENYL}-4-METHOXYBENZAMIDE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
18IR1Ligand/IonN-{4-[(2-CHLOROPHENYL)(PYRIMIDIN-4-YL)CARBAMOYL]PHENYL}-4-METHOXYBENZAMIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
18IR1Ligand/IonN-{4-[(2-CHLOROPHENYL)(PYRIMIDIN-4-YL)CARBAMOYL]PHENYL}-4-METHOXYBENZAMIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1033 , PHE A:1035 , ALA A:1038 , GLY A:1043 , ASP A:1045 , HIS A:1048 , GLY A:1058 , ILE A:1059 , TYR A:1060 , TYR A:1071 , ILE A:1075BINDING SITE FOR RESIDUE 8IR A1170
2AC2SOFTWARECYS A:1081 , HIS A:1084 , CYS A:1089 , CYS A:1092BINDING SITE FOR RESIDUE ZN A1173
3AC3SOFTWARESER B:1033 , PHE B:1035 , GLY B:1043 , PHE B:1044 , ASP B:1045 , HIS B:1048 , GLY B:1058 , ILE B:1059 , TYR B:1060 , TYR B:1071 , ILE B:1075BINDING SITE FOR RESIDUE 8IR B1170
4AC4SOFTWARECYS B:1081 , HIS B:1084 , CYS B:1089 , CYS B:1092BINDING SITE FOR RESIDUE ZN B1173

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AEH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AEH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AEH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AEH)

(-) Exons   (0, 0)

(no "Exon" information available for 5AEH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eee..hhhhhhh...hhhhh...............eeeeeeeee...eee.............eeee..........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5aeh A  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111|     1123      1133      1143      1153        
                                                                                                                                                                                        1111|                                               
                                                                                                                                                                                         1114                                               


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeee..........eeee......eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5aeh B  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFMAHSPPGHHSVTGRPLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1115      1125   || 1139      1149      1159  
                                                                                                                                                                                       1110|          1129|                           
                                                                                                                                                                                        1115           1134
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AEH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AEH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AEH)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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  5aeh
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  TNKS2_HUMAN | Q9H2K2
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS2_HUMAN | Q9H2K2: 2y0i 3kr7 3kr8 3mhj 3mhk 3p0n 3p0p 3p0q 3twq 3twr 3tws 3twt 3twu 3twv 3tww 3twx 3u9h 3u9y 3ua9 3w51 4avu 4avw 4bfp 4bj9 4bjb 4bjc 4bs4 4bu3 4bu5 4bu6 4bu7 4bu8 4bu9 4bua 4bud 4bue 4buf 4bui 4bus 4but 4buu 4buv 4buw 4bux 4buy 4hki 4hkk 4hkn 4hl5 4hlf 4hlg 4hlh 4hlk 4hlm 4hmh 4hyf 4iue 4j1z 4j21 4j22 4j3l 4j3m 4kzl 4kzq 4kzu 4l09 4l0b 4l0i 4l0s 4l0t 4l0v 4l10 4l2f 4l2g 4l2k 4l31 4l32 4l33 4l34 4m7b 4pml 4pnl 4pnm 4pnn 4pnq 4pnr 4pns 4pnt 4tju 4tjw 4tjy 4tk0 4tk5 4tkf 4tkg 4tki 4ufu 4ufy 4uhg 4ui3 4ui4 4ui5 4ui6 4ui7 4ui8 4uvl 4uvn 4uvo 4uvp 4uvs 4uvt 4uvu 4uvv 4uvw 4uvx 4uvy 4uvz 4ux4 4w5i 4z68 5adq 5adr 5ads 5adt 5aku 5akw 5al1 5al2 5al3 5al4 5al5 5bxo 5bxu 5c5p 5c5q 5c5r 5dcz 5fpf 5fpg 5jrt

(-) Related Entries Specified in the PDB File

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